Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: Integrase, catalytic core

Term: IPR001584  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v2.0_unigene59765 SustainPine v2.0 276
AutoFact: Integrase n=1 Tax=Cucumis melo subsp. melo RepID=A6YTD9_CUCME 6.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 9.72362e-19
Internal
sp_v2.0_unigene59776 SustainPine v2.0 617
AutoFact: Integrase n=1 Tax=Populus trichocarpa RepID=Q0ZCD0_POPTR 3.0e-37
FL-Next: tr=Integrase; subsp. trichocarpa). 0.0
Blast2go: uncharacterized protein loc100854171 5.25413e-37
Internal
sp_v2.0_unigene59809 SustainPine v2.0 512
AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: gag-pol polyprotein 0.0
Putative Complete
sp_v2.0_unigene59816 SustainPine v2.0 348
AutoFact: Polyprotein n=1 Tax=Drosophila melanogaster RepID=B6V6Z8_DROME 5.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: copia-type polyprotein 6.89209e-31
Internal
sp_v2.0_unigene59828 SustainPine v2.0 434
AutoFact: OSJNBa0054D14.1 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XW39_ORYSJ 2.0e-20
FL-Next: tr=OSJNBa0054D14.1 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: retrotransposon unclassified 3.12789e-26
Internal
sp_v2.0_unigene59883 SustainPine v2.0 280
AutoFact: Gag-pol polyprotein, putative [Solanum demissum] 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 1.40285e-30
Internal
sp_v2.0_unigene59896 SustainPine v2.0 275
AutoFact: Putative reverse transcriptase n=1 Tax=Petunia x hybrida RepID=Q6VPE7_PETHY 3.0e-23
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: reverse transcriptase domain 5.29307e-28
N-terminus
sp_v2.0_unigene59932 SustainPine v2.0 598
AutoFact: Putative retrotransposon polyprotein n=1 Tax=Ipomoea batatas RepID=Q5MG92_IPOBA 0.0
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: gag-pol polyprotein 0.0
Putative Complete
sp_v2.0_unigene59999 SustainPine v2.0 433
AutoFact: putative reverse-transcriptase-like protein [Arabidopsis thaliana] emb|CAB78181.1| putative reverse-transcriptase-like protein [Arabidopsis thaliana] 5.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse-transcriptase-like protein 3.63293e-32
Putative Complete
sp_v2.0_unigene60008 SustainPine v2.0 546
AutoFact: rve domain containing protein 1.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 1.98564e-42
Internal
sp_v2.0_unigene60015 SustainPine v2.0 554
AutoFact: Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella spiralis RepID=E5SB91_TRISP 3.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrovirus-related pol polyprotein from transposon tnt 1-94 5.49244e-27
Putative C-terminus
sp_v2.0_unigene60033 SustainPine v2.0 668
AutoFact: cytochrome P450 [Pyrus communis] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: cytochrome p450 monooxygenase cyp736b 0.0
C-terminus
sp_v2.0_unigene60040 SustainPine v2.0 866
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10KL1_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Putative C-terminus
sp_v2.0_unigene60052 SustainPine v2.0 383
AutoFact: Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Nicotiana tabacum RepID=POLX_TOBAC 2.0e-35
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: polx_tobac ame: full=retrovirus-related pol polyprotein from transposon tnt 1-94 includes: ame: full=protease includes: ame: full=reverse transcriptase includes: ame: full=endonuclease 2.04982e-41
Internal
sp_v2.0_unigene60054 SustainPine v2.0 336
AutoFact: WS0346.C21_E20 WS-SE-N-A-19 Picea glauca cDNA clone WS0346_E20 3, mRNA sequence. 0.0
FL-Next: tr=Similar to Arabidopsis thaliana chromosome II BAC F26H6; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: uncharacterized protein loc100853628 3.02899e-28
Internal
sp_v2.0_unigene60061 SustainPine v2.0 472
AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: gag-pol polyprotein 0.0
Internal
sp_v2.0_unigene60096 SustainPine v2.0 668
AutoFact: putative xyloglucan endotransglucosylase/hydrolase [Selaginella kraussiana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 0.0
C-terminus
sp_v2.0_unigene60392 SustainPine v2.0 1174
AutoFact: PLAC8 family protein [Arabidopsis thaliana] sp|Q9M9A5.1|PCR6_ARATH RecName: Full=Protein PLANT CADMIUM RESISTANCE 6; Short=AtPCR6 gb|AAF69715.1|AC016041_20 F27J15.18 [Arabidopsis thaliana] gb|AAR24706.1| At1g49030 [Arabidopsis thaliana] gb|AAS47652.1| At1 4.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
sp_v2.0_unigene60510 SustainPine v2.0 1450
AutoFact: ABCG subfamily transporter n=2 Tax=Solanum tuberosum RepID=F5C1T7_SOLTU 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pleiotropic drug resistance protein 1-like 0.0
Putative Complete
sp_v2.0_unigene60709 SustainPine v2.0 862
AutoFact: Unassigned protein
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: retrotransposon unclassified 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain