Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: production of ta-siRNAs involved in RNA interference

Term: GO:0010267  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene20637 SustainPine v2.0 278
• AutoFact: Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO 4.0e-08
• FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: endoribonuclease dicer homolog 3a-like 2.00543e-11
Internal
sp_v2.0_unigene22879 SustainPine v2.0 943
• AutoFact: Unassigned protein
• FL-Next: sp=Serrate RNA effector molecule; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: serrate rna effector molecule 1.46258e-09
C-terminus
sp_v2.0_unigene25310 SustainPine v2.0 2112
• AutoFact: CAF protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: endoribonuclease dicer 0.0
C-terminus
sp_v2.0_unigene25813 SustainPine v2.0 1363
• AutoFact: Protein SUPPRESSOR OF GENE SILENCING 3 homolog n=2 Tax=Oryza sativa RepID=SGS3_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein suppressor of gene silencing 3-like 0.0
C-terminus
sp_v2.0_unigene27583 SustainPine v2.0 1906
• AutoFact: RecName: Full=Endoribonuclease Dicer homolog 4; AltName: Full=Dicer-like protein 4; Short=OsDCL4; AltName: Full=Protein SHOOT ORGANIZATION 1 gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dicer-like protein 4 0.0
C-terminus
sp_v2.0_unigene27589 SustainPine v2.0 781
• AutoFact: rgd1, SGS3, lbl1; ragged seedling1 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein suppressor of gene silencing-like protein 0.0
N-terminus
sp_v2.0_unigene28213 SustainPine v2.0 1775
• AutoFact: Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IKW9_POPTR 0.0
• FL-Next: sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna-dependent rna polymerase 6 0.0
C-terminus
sp_v2.0_unigene28419 SustainPine v2.0 1042
• AutoFact: Endoribonuclease Dicer homolog 1 n=4 Tax=Poaceae RepID=DCL1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: endoribonuclease dicer homolog 1-like 0.0
Putative Complete
sp_v2.0_unigene29535 SustainPine v2.0 751
• AutoFact: Protein SUPPRESSOR OF GENE SILENCING 3 n=1 Tax=Solanum lycopersicum RepID=SGS3_SOLLC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein suppressor of gene silencing 3-like 0.0
Putative C-terminus
sp_v2.0_unigene32372 SustainPine v2.0 321
• AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: endoribonuclease dicer 0.0
Internal
sp_v2.0_unigene33719 SustainPine v2.0 897
• AutoFact: argonaute-like protein [Arabidopsis thaliana] sp|Q9C793.1|AGO7_ARATH RecName: Full=Protein argonaute 7; AltName: Full=Protein ZIPPY gb|AAG60096.1|AC073178_7 pinhead-like protein [Arabidopsis thaliana] gb|AAQ92355.1| ZIPPY [Arabidopsis thaliana] gb|AEE3492 0.0
• FL-Next: tr=Argonaute/Zwille-like protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: protein argonaute 7-like 0.0
Internal
sp_v2.0_unigene37569 SustainPine v2.0 249
• AutoFact: protein SUPPRESSOR OF GENE SILENCING 3 [Arabidopsis thaliana] sp|Q9LDX1.1|SGS3_ARATH RecName: Full=Protein SUPPRESSOR OF GENE SILENCING 3; Short=AtSGS3 gb|AAF73960.1| SGS3 [Arabidopsis thaliana] dbj|BAA97244.1| unnamed protein product [Arabidopsis thalian 1.0e-11
• FL-Next: sp=Protein SUPPRESSOR OF GENE SILENCING 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: protein suppressor of gene silencing-like protein 2.92643e-15
Internal
sp_v2.0_unigene37971 SustainPine v2.0 304
• AutoFact: Isoform 2 of Endoribonuclease Dicer homolog 4 n=1 Tax=Oryza sativa Japonica Group RepID=A7LFZ6-2 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dicer-like protein 1.05491e-38
Internal
sp_v2.0_unigene38226 SustainPine v2.0 441
• AutoFact: protein dicer-like 3 [Arabidopsis thaliana] emb|CAB88120.1| putative protein [Arabidopsis thaliana] gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana] gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana] 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein dicer-like 3 7.88203e-23
Internal
sp_v2.0_unigene39790 SustainPine v2.0 507
• AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO 6.0e-31
• FL-Next: Isoform 2 of Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 0.0
• Blast2go: dicer-like protein 3.31938e-36
N-terminus
sp_v2.0_unigene41271 SustainPine v2.0 334
• AutoFact: Argonaute protein group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HXP0_POPTR 4.0e-25
• FL-Next: sp=Protein argonaute 7; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: protein argonaute 7-like 3.59372e-30
Internal
sp_v2.0_unigene42131 SustainPine v2.0 486
• AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: endoribonuclease dicer homolog 1-like 0.0
Internal
sp_v2.0_unigene43411 SustainPine v2.0 449
• AutoFact: dicer-like protein 4 [Arabidopsis thaliana] sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4 gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana] gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana] 1.0e-23
• FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: dicer-like protein 4 2.33489e-34
Internal
sp_v2.0_unigene44131 SustainPine v2.0 351
• AutoFact: Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9RQZ1_RICCO 3.0e-34
• FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: endoribonuclease dicer homolog 3a-like 1.29344e-39
Internal
sp_v2.0_unigene45297 SustainPine v2.0 373
• AutoFact: RecName: Full=Endoribonuclease Dicer homolog 1; AltName: Full=Dicer-like protein 1; Short=OsDCL1 gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group] gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: endoribonuclease dicer homolog 1-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain