Sustainpine_db
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Assembly Name: SustainPine v2.0

Name: membrane

Term: GO:0016020  Help

Source: GO from Blast2go

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v2.0_unigene68348 SustainPine v2.0 417
• AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 1.0e-22
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: u5 small nuclear ribonucleoprotein 200 kda helicase 2.86561e-27
N-terminus
sp_v2.0_unigene68451 SustainPine v2.0 521
• AutoFact: Vacuolar ATP synthase proteolipid subunit, putative n=1 Tax=Ricinus communis RepID=B9RK01_RICCO 1.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: vacuolar atp synthase 21 kda proteolipid subunit 1.4013e-45
N-terminus
sp_v2.0_unigene69316 SustainPine v2.0 426
• AutoFact: 60S ribosomal protein L18-3 [Arabidopsis thaliana] sp|Q940B0.1|RL183_ARATH RecName: Full=60S ribosomal protein L18-3 gb|AAL07220.1| putative 60S ribosomal protein [Arabidopsis thaliana] gb|AAM67529.1| putative 60S ribosomal protein [Arabidopsis thaliana] 3.00018e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 60s ribosomal protein l18-3-like 0.0
Putative C-terminus
sp_v2.0_unigene69398 SustainPine v2.0 311
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 2.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s11 9.98429e-34
Putative N-terminus
sp_v2.0_unigene69586 SustainPine v2.0 579
• AutoFact: Pyruvate decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9RLM7_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pyruvate decarboxylase 0.0
N-terminus
sp_v2.0_unigene69618 SustainPine v2.0 487
• AutoFact: suppressor of lin-12-like protein-related / sel-1 protein-related 0.0
• FL-Next: tr=Putative uncharacterized protein; subsp. trichocarpa). 0.0
• Blast2go: protein sel-1 homolog 2-like 0.0
Internal
sp_v2.0_unigene70316 SustainPine v2.0 424
• AutoFact: 60S ribosomal protein L11-1 n=51 Tax=Embryophyta RepID=RL111_ARATH 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 60s ribosomal protein l11 1.23851e-25
C-terminus
sp_v2.0_unigene70629 SustainPine v2.0 280
• AutoFact: 'GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase' n=3 Tax=Oryza sativa RepID=Q6L506_ORYSJ 2.0e-19
• FL-Next: sp=Riboflavin biosynthesis protein ribBA, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: riboflavin biosynthesis protein chloroplastic-like 8.38708e-24
Internal
sp_v2.0_unigene71442 SustainPine v2.0 284
• AutoFact: Pyruvate kinase n=1 Tax=Picea sitchensis RepID=B8LLZ7_PICSI 7.0e-31
• FL-Next: sp=Pyruvate kinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pyruvate kinase family expressed 1.37235e-30
Internal
sp_v2.0_unigene72154 SustainPine v2.0 384
• AutoFact: alanine aminotransferase [Oryza sativa Indica Group] 7.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: alanine aminotransferase 1.88122e-22
Internal
sp_v2.0_unigene73269 SustainPine v2.0 378
• AutoFact: Coatomer subunit alpha-2 n=4 Tax=Arabidopsis RepID=COPA2_ARATH 4.0e-12
• FL-Next: sp=Coatomer subunit alpha-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: coatomer alpha subunit 8.26579e-12
Internal
sp_v2.0_unigene74413 SustainPine v2.0 366
• AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pre-mrna-processing-splicing factor 0.0
Internal
sp_v2.0_unigene74644 SustainPine v2.0 429
• AutoFact: Zinc finger family-like protein (Fragment) n=4 Tax=Picea sitchensis RepID=E0ZH37_PICSI 3.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger family-like protein 3.0748e-27
C-terminus
sp_v2.0_unigene74786 SustainPine v2.0 270
• AutoFact: MtN3_slv domain containing protein 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nodulin 3-like protein 2.06055e-10
Internal
sp_v2.0_unigene75052 SustainPine v2.0 429
• AutoFact: GTP cyclohydrolase-2 [Arabidopsis thaliana] sp|P47924.2|RIBBA_ARATH RecName: Full=Riboflavin biosynthesis protein ribBA, chloroplastic; Includes: RecName: Full=3,4-dihydroxy-2-butanone 4-phosphate synthase; Short=DHBP synthase; Includes: RecName: Full=GTP 8.0e-29
• FL-Next: sp=Riboflavin biosynthesis protein ribBA, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: riboflavin biosynthesis protein chloroplastic-like 6.09941e-35
Internal
sp_v2.0_unigene76784 SustainPine v2.0 2741
• AutoFact: PA domain containing protein 5.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: vacuolar-sorting receptor 3 0.0
Putative Complete
sp_v2.0_unigene76842 SustainPine v2.0 788
• AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 1.96182e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s9 0.0
C-terminus
sp_v2.0_unigene76856 SustainPine v2.0 1282
• AutoFact: Formate dehydrogenase n=1 Tax=Populus trichocarpa RepID=A9PEQ6_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: formate dehydrogenase 0.0
C-terminus
sp_v2.0_unigene77008 SustainPine v2.0 527
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uncharacterized protein 0.0
Putative C-terminus
sp_v2.0_unigene77065 SustainPine v2.0 454
• AutoFact: coatomer subunit alpha-1 [Arabidopsis thaliana] sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 fro 2.0e-09
• FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: coatomer subunit alpha-1 1.45457e-10
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain