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Assembly Name: uagpf v2.0

Name: Pumilio RNA-binding repeat

Term: IPR001313  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene18793 uagpf v2.0 332
AutoFact: transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gb|AEC09638.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] 0.0
Blast2go: vacuolar amino acid transporter 1-like 0.0
unknown
uagpf_v2_unigene19192 uagpf v2.0 698
AutoFact: transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gb|AEC09638.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: amino acid transporter 0.0
Complete
uagpf_v2_unigene19629 uagpf v2.0 724
AutoFact: Nucleic acid binding NABP [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pumilio homolog 2-like 0.0
Complete
uagpf_v2_unigene19722 uagpf v2.0 269
AutoFact: Nucleic acid binding NABP [Medicago truncatula] 0.0
Blast2go: pumilio homolog 2-like 0.0
unknown
uagpf_v2_unigene24972 uagpf v2.0 1115
AutoFact: transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gb|AAK64155.1| unknown protein [Arabidopsis thaliana] gb|AAL85095.1| unknown protein [Arabidopsis thaliana] gb|AAD11993.2| expressed protein [Arabidopsis thaliana] gb|AEC09942.1| tra 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: vacuolar amino acid transporter 1-like 0.0
Complete
uagpf_v2_unigene25841 uagpf v2.0 368
AutoFact: Unassigned protein
FL-Next: sp=Pumilio homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pumilio homolog 2-like 1.12651e-35
N-terminus
uagpf_v2_unigene26774 uagpf v2.0 311
AutoFact: DUF632 domain containing protein 0.0
Blast2go: bzip transcription factor bzip133 0.0
unknown
uagpf_v2_unigene28477 uagpf v2.0 350
AutoFact: DUF659 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein loc100247282 0.0
Putative Complete
uagpf_v2_unigene30779 uagpf v2.0 322
AutoFact: DUF659 multi-domain protein 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uncharacterized protein loc100247282 0.0
Internal
uagpf_v2_unigene32960 uagpf v2.0 341
AutoFact: Unassigned protein
FL-Next: sp=Pumilio homolog 23; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pumilio 23 0.0
Internal
uagpf_v2_unigene33949 uagpf v2.0 325
AutoFact: Unassigned protein
Blast2go: pumilio homolog 2-like 1.12651e-35
unknown
uagpf_v2_unigene34103 uagpf v2.0 120
AutoFact: DUF632 domain containing protein 0.0
Blast2go: bzip transcription factor bzip133 0.0
unknown
uagpf_v2_unigene36993 uagpf v2.0 386
AutoFact: pumilio domain-containing protein PPD1 [Populus tremula x Populus tremuloides] 2.0e-38
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene38165 uagpf v2.0 538
AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene38570 uagpf v2.0 409
AutoFact: Predicted protein n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SMX6_PHYPA 0.0
FL-Next: tr=PUF-domain RNA-binding protein; Physcomitrella patens. 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene39392 uagpf v2.0 402
AutoFact: Predicted protein n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SMX6_PHYPA 0.0
FL-Next: sp=Pumilio homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene40434 uagpf v2.0 263
AutoFact: pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 4.0e-05
Blast2go: protein 1.71025e-33
Putative coding
uagpf_v2_unigene40659 uagpf v2.0 544
AutoFact: DUF659 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: dna binding 0.0
Internal
uagpf_v2_unigene40747 uagpf v2.0 442
AutoFact: pumilio domain-containing protein PPD1 [Populus tremula x Populus tremuloides] 2.0e-38
Blast2go: protein 0.0
unknown
uagpf_v2_unigene40913 uagpf v2.0 359
AutoFact: Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gb|AEE79297.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] 4.0e-31
Blast2go: amino acid 8.77213e-43
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain