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Assembly Name: uagpf v2.0

Name: RNA-binding S4 domain

Term: IPR002942  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene1775 uagpf v2.0 549
AutoFact: RNA-binding S4 domain-containing protein [Arabidopsis thaliana] gb|AAL24321.1| Unknown protein [Arabidopsis thaliana] gb|AAN65106.1| Unknown protein [Arabidopsis thaliana] gb|AAO00774.1| Unknown protein [Arabidopsis thaliana] gb|AAP42730.1| At1g53120 [Ara 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding s4 domain-containing protein 0.0
C-terminus
uagpf_v2_unigene5178 uagpf v2.0 264
AutoFact: RNA pseudourine synthase 5 [Arabidopsis thaliana] sp|Q5M721.2|PUS5_ARATH RecName: Full=RNA pseudourine synthase 5; AltName: Full=RNA pseudouridylate synthase 5; AltName: Full=RNA-uridine isomerase 5 gb|AEE78921.1| RNA pseudourine synthase 5 [Arabidopsis t 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna pseudourine synthase 5 0.0
C-terminus
uagpf_v2_unigene7541 uagpf v2.0 517
AutoFact: putative hemolysin [Arabidopsis thaliana] dbj|BAB01316.1| hemolysin-like [Arabidopsis thaliana] gb|AAM65296.1| hemolysin, putative [Arabidopsis thaliana] gb|AEE77014.1| putative hemolysin [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein yqxc-like 0.0
C-terminus
uagpf_v2_unigene8718 uagpf v2.0 732
AutoFact: suppressor of variegation1 causing pseudouridine synthase-like protein [Arabidopsis thaliana] gb|AAM66944.1| unknown [Arabidopsis thaliana] dbj|BAC42334.1| unknown protein [Arabidopsis thaliana] gb|AEC09639.1| suppressor of variegation1 causing pseudourid 0.0
FL-Next: tr=Putative uncharacterized protein At2g39150; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene12932 uagpf v2.0 546
AutoFact: Unassigned protein
Blast2go: uncharacterized protein 0.0
unknown
uagpf_v2_unigene13997 uagpf v2.0 645
AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein 0.0
C-terminus
uagpf_v2_unigene14828 uagpf v2.0 1450
AutoFact: S4/Hsp/ tRNA synthetase RNA-binding domain-containing protein [Arabidopsis thaliana] dbj|BAD42946.1| ribosomal protein-like [Arabidopsis thaliana] gb|ABF83660.1| At5g15750 [Arabidopsis thaliana] gb|AED92201.1| S4/Hsp/ tRNA synthetase RNA-binding domain-co 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene16615 uagpf v2.0 1228
AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein 0.0
Complete
uagpf_v2_unigene18330 uagpf v2.0 1258
AutoFact: 40S ribosomal S4 protein [Glycine max] gb|ACU21252.1| unknown [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
uagpf_v2_unigene18988 uagpf v2.0 705
AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein 0.0
C-terminus
uagpf_v2_unigene19544 uagpf v2.0 439
AutoFact: 40S ribosomal S4 protein [Glycine max] gb|ACU21252.1| unknown [Glycine max] 0.0
FL-Next: tr=Low temprature induced-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative Complete
uagpf_v2_unigene19739 uagpf v2.0 592
AutoFact: 40S ribosomal S4 protein [Glycine max] gb|ACU21252.1| unknown [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s4 0.0
N-terminus
uagpf_v2_unigene19958 uagpf v2.0 646
AutoFact: 40S ribosomal protein S9, putative n=5 Tax=fabids RepID=B9RUP5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein 0.0
N-terminus
uagpf_v2_unigene20034 uagpf v2.0 911
AutoFact: 40S ribosomal S4 protein [Glycine max] gb|ACU21252.1| unknown [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 40s ribosomal protein s4 0.0
C-terminus
uagpf_v2_unigene33374 uagpf v2.0 195
AutoFact: Tyrosyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RGT2_RICCO 0.0
FL-Next: tr=Os01g0500900 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: tyrosyl-trna synthetase-like 0.0
Internal
uagpf_v2_unigene34756 uagpf v2.0 395
AutoFact: putative hemolysin [Arabidopsis thaliana] dbj|BAB01316.1| hemolysin-like [Arabidopsis thaliana] gb|AAM65296.1| hemolysin, putative [Arabidopsis thaliana] gb|AEE77014.1| putative hemolysin [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein yqxc-like 0.0
N-terminus
uagpf_v2_unigene36879 uagpf v2.0 359
AutoFact: U3 small nucleolar ribonucleoprotein protein IMP3, putative [Toxoplasma gondii ME49] emb|CAJ20632.1| s4 domain, putative [Toxoplasma gondii RH] gb|EEB02552.1| U3 small nucleolar ribonucleoprotein protein IMP3, putative [Toxoplasma gondii ME49] gb|EEE21239 4.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 2.33955e-19
N-terminus
uagpf_v2_unigene40854 uagpf v2.0 373
AutoFact: RNA pseudourine synthase 2 [Arabidopsis thaliana] sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA pseudourine synthase 2, chloroplastic; AltName: Full=RNA pseudouridylate synthase 2; AltName: Full=RNA-uridine isomerase 2; Flags: Precursor gb|AEE35790.1| RNA pseu 0.0
FL-Next: sp=RNA pseudourine synthase 2, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: rna pseudourine synthase chloroplastic-like 0.0
C-terminus
uagpf_v2_unigene44899 uagpf v2.0 285
AutoFact: Tyrosyl-tRNA synthetase, putative n=1 Tax=Ricinus communis RepID=B9RGT2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: tyrosyl-trna synthetase-like 0.0
C-terminus
uagpf_v2_unigene49268 uagpf v2.0 343
AutoFact: RNA pseudourine synthase 7 [Arabidopsis thaliana] sp|Q9LU60.1|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj|BAA97376.1| unnamed protein product [Arabidopsis tha 8.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna pseudourine synthase 7 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain