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Assembly Name: uagpf v2.0

Name: WD40-repeat-containing domain

Term: IPR017986  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene31050 uagpf v2.0 264
AutoFact: WD-40 repeat protein-like [Oryza sativa Japonica Group] gb|EAZ41606.1| hypothetical protein OsJ_26138 [Oryza sativa Japonica Group] 0.0
FL-Next: Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 0.0
Blast2go: wd repeat-containing 0.0
Internal
uagpf_v2_unigene31104 uagpf v2.0 297
AutoFact: protein HIRA [Zea mays] sp|Q32SG6.1|HIRA_MAIZE RecName: Full=Protein HIRA; AltName: Full=Histone regulator protein gb|AAY24681.1| HIRA [Zea mays] 1.0e-08
Blast2go: histone transcription regulator hira 5.78727e-11
unknown
uagpf_v2_unigene31551 uagpf v2.0 622
AutoFact: FVE n=2 Tax=Papilionoideae RepID=Q52ZH8_PEA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nucleosome chromatin assembly factor group 0.0
N-terminus
uagpf_v2_unigene31609 uagpf v2.0 358
AutoFact: Katanin p80 WD40 repeat-containing subunit B1-1 [Arabidopsis thaliana] sp|Q8H0T9.3|KTNB1_ARATH RecName: Full=Katanin p80 WD40 repeat-containing subunit B1 homolog 1 gb|AAN72064.1| putative protein [Arabidopsis thaliana] gb|AED93166.1| Katanin p80 WD40 rep 5.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: katanin p80 wd40 repeat-containing subunit b1 homolog 1-like 6.4305e-25
C-terminus
uagpf_v2_unigene31633 uagpf v2.0 721
AutoFact: WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ 3.0e-20
FL-Next: sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 5.26987e-20
Putative C-terminus
uagpf_v2_unigene31831 uagpf v2.0 757
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] ref|NP_001189878.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK82560.1| AT3g13340/MDC11_13 [Arabidopsis thaliana] gb|AAM98109.1| At3g13340/MDC11_13 [Arabidopsis t 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene31846 uagpf v2.0 386
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ramosa 1 enhancer locus 2 0.0
Putative N-terminus
uagpf_v2_unigene31917 uagpf v2.0 752
AutoFact: peptidyl-prolyl cis-trans isomerase SDCCAG10 [Arabidopsis thaliana] gb|AAS75308.1| multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gb|ABF57285.1| At4g33060 [Arabidopsis thaliana] gb|AEE86168.1| peptidyl-prolyl cis-t 0.0
FL-Next: tr=Peptidyl-prolyl isomerase CWC27; Zea mays (Maize). 0.0
Blast2go: peptidyl-prolyl cis-trans 0.0
C-terminus
uagpf_v2_unigene31918 uagpf v2.0 983
AutoFact: RecName: Full=Protein HIRA; AltName: Full=Histone regulator protein emb|CAB88535.1| WD repeat domain protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Protein HIRA; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein hira 0.0
C-terminus
uagpf_v2_unigene32023 uagpf v2.0 639
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] ref|NP_001189878.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAK82560.1| AT3g13340/MDC11_13 [Arabidopsis thaliana] gb|AAM98109.1| At3g13340/MDC11_13 [Arabidopsis t 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene32040 uagpf v2.0 756
AutoFact: [R] COG2319 FOG: WD40 repeat 0.0001
Blast2go: photomorphogenesis repressor protein 0.0
Putative coding
uagpf_v2_unigene32063 uagpf v2.0 490
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] dbj|BAC41980.1| unknown protein [Arabidopsis thaliana] gb|AAO64896.1| At4g34280 [Arabidopsis thaliana] gb|AEE86354.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene32128 uagpf v2.0 528
AutoFact: F-box and wd40 domain protein, putative n=1 Tax=Ricinus communis RepID=B9S6L1_RICCO 0.0
FL-Next: sp=F-box/WD-40 repeat-containing protein At5g21040; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: at5g21040-like protein 0.0
N-terminus
uagpf_v2_unigene32152 uagpf v2.0 556
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AEE82568.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Os03g0735100 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: transducin wd40 domain-containing protein 0.0
C-terminus
uagpf_v2_unigene32210 uagpf v2.0 412
AutoFact: WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ 1.0e-27
FL-Next: sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: topless-related protein 4-like 2.80669e-29
Internal
uagpf_v2_unigene32221 uagpf v2.0 240
AutoFact: Periodic tryptophan protein-associated region; WD40-like [Medicago truncatula] 0.0
Blast2go: periodic tryptophan protein 2 0.0
unknown
uagpf_v2_unigene32342 uagpf v2.0 386
AutoFact: coatomer alpha subunit-like protein [Lotus japonicus] 0.0
FL-Next: sp=Coatomer subunit alpha-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: coatomer alpha 0.0
Internal
uagpf_v2_unigene32343 uagpf v2.0 312
AutoFact: Unassigned protein
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 6.09798e-14
Internal
uagpf_v2_unigene32364 uagpf v2.0 478
AutoFact: similar to beta-transducins (Pfam: PF00400, Score=71.7, E=1.5e-17, N=6) [Arabidopsis thaliana] emb|CAB81036.1| putative WD-repeat membrane protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: wd-repeat membrane protein 0.0
Internal
uagpf_v2_unigene32898 uagpf v2.0 383
AutoFact: WD-40 repeat family protein 3.0e-11
Blast2go: protein 7.30081e-13
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain