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Assembly Name: uagpf v2.0

Name: WD40-repeat-containing domain

Term: IPR017986  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene25339 uagpf v2.0 455
AutoFact: Coatomer alpha subunit-like protein n=2 Tax=Lotus japonicus RepID=Q70I39_LOTJA 9.0e-24
Blast2go: coatomer alpha subunit 1.40673e-26
unknown
uagpf_v2_unigene25383 uagpf v2.0 372
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S0D0_RICCO 3.0e-27
FL-Next: tr=WD-repeat protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: wd repeat-containing protein 3-like 4.20189e-30
Putative C-terminus
uagpf_v2_unigene25405 uagpf v2.0 324
AutoFact: phospholipase A-2-activating protein [Arabidopsis thaliana] gb|AAK95297.1|AF410311_1 AT3g18860/MCB22_3 [Arabidopsis thaliana] dbj|BAB03095.1| unnamed protein product [Arabidopsis thaliana] gb|AEE76160.1| phospholipase A-2-activating protein [Arabidopsis t 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: phospholipase a-2-activating protein 0.0
Internal
uagpf_v2_unigene25472 uagpf v2.0 553
AutoFact: peptidylprolyl isomerase (cyclophilin)-like [Arabidopsis thaliana] gb|AAM13295.1| peptidylprolyl isomerase (cyclophilin)-like [Arabidopsis thaliana] 0.0
FL-Next: sp=Peptidyl-prolyl cis-trans isomerase-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: peptidyl-prolyl cis-trans isomerase-like 2-like 0.0
Putative C-terminus
uagpf_v2_unigene25522 uagpf v2.0 511
AutoFact: Cellulose synthase n=1 Tax=Pinus radiata RepID=Q4VWW7_PINRA 0.0
Blast2go: cellulose synthase a catalytic subunit 3 0.0
unknown
uagpf_v2_unigene25603 uagpf v2.0 592
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: glycine-rich protein 0.0
C-terminus
uagpf_v2_unigene25720 uagpf v2.0 510
AutoFact: Preprotein translocase secA-like protein n=5 Tax=Arabidopsis thaliana RepID=F4HY36_ARATH 2.0e-38
FL-Next: tr=Putative SecA-type chloroplast protein transport factor; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 1.82169e-44
C-terminus
uagpf_v2_unigene25803 uagpf v2.0 595
AutoFact: Neurobeachin, putative n=1 Tax=Ricinus communis RepID=B9RZY6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable inactive serine threonine-protein kinase lvsg-like 0.0
Putative Complete
uagpf_v2_unigene25960 uagpf v2.0 392
AutoFact: Pre-mRNA-processing factor 19 [Arabidopsis thaliana] sp|Q94BR4.1|PR19A_ARATH RecName: Full=Pre-mRNA-processing factor 19 homolog 1; AltName: Full=MOS4-associated complex protein 3A; Short=MAC protein 3A; AltName: Full=Plant U-box protein 59; AltName: Full 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin-protein pub59 0.0
Internal
uagpf_v2_unigene25994 uagpf v2.0 395
AutoFact: protein TOPLESS [Arabidopsis thaliana] ref|NP_849672.1| protein TOPLESS [Arabidopsis thaliana] ref|NP_001031050.1| protein TOPLESS [Arabidopsis thaliana] ref|NP_001031051.1| protein TOPLESS [Arabidopsis thaliana] sp|Q94AI7.1|TPL_ARATH RecName: Full=Protei 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein topless 0.0
N-terminus
uagpf_v2_unigene26103 uagpf v2.0 569
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] ref|NP_850516.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AAL07141.1| unknown protein [Arabidopsis thaliana] gb|AAM83246.1| AT3g05090/T12H1_5 [Arabidopsis thalia 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wd repeat-containing protein 48-like 0.0
Putative C-terminus
uagpf_v2_unigene26110 uagpf v2.0 487
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAL87251.1| putative WD-repeat protein [Arabidopsis thaliana] gb|AAM67522.1| putative WD-repeat protein [Arabidopsis thaliana] gb|AED96732.1| transducin/WD40 domain-containing protein [Ar 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 6.10185e-26
N-terminus
uagpf_v2_unigene26114 uagpf v2.0 462
AutoFact: Unassigned protein
FL-Next: sp=U3 small nucleolar RNA-associated protein 18 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: u3 small nucleolar rna-associated protein 18 homolog 0.0
Internal
uagpf_v2_unigene26443 uagpf v2.0 419
AutoFact: transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb|AEC06823.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: transducin family protein 0.0
Internal
uagpf_v2_unigene26496 uagpf v2.0 415
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] ref|NP_001190666.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AAM20586.1| putative WD-repeat protein [Arabidopsis thaliana] gb|AAN15676.1| putative WD-repeat protei 0.0
FL-Next: sp=LEC14B homolog; Prunus armeniaca (Apricot). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene26642 uagpf v2.0 288
AutoFact: Katanin p80 WD40 repeat-containing subunit B1-1 [Arabidopsis thaliana] sp|Q8H0T9.3|KTNB1_ARATH RecName: Full=Katanin p80 WD40 repeat-containing subunit B1 homolog 1 gb|AAN72064.1| putative protein [Arabidopsis thaliana] gb|AED93166.1| Katanin p80 WD40 rep 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: katanin p80 wd40 repeat-containing subunit b1 homolog 1-like 0.0
C-terminus
uagpf_v2_unigene26734 uagpf v2.0 469
AutoFact: transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb|AED96505.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: wd repeat-containing protein 25-like 0.0
C-terminus
uagpf_v2_unigene26743 uagpf v2.0 321
AutoFact: peptidylprolyl isomerase domain and WD repeat-containing protein 1 [Arabidopsis thaliana] gb|AAL32731.1| putative protein [Arabidopsis thaliana] gb|AAP37741.1| At3g44600 [Arabidopsis thaliana] gb|AEE77920.1| peptidylprolyl isomerase domain and WD repeat-c 5.0e-08
FL-Next: tr=Putative uncharacterized protein F14L2_150; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
uagpf_v2_unigene26882 uagpf v2.0 447
AutoFact: Serine/threonine-protein phosphatase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TP64_VITVI 0.0
Blast2go: serine threonine protein phosphatase 0.0
unknown
uagpf_v2_unigene26906 uagpf v2.0 355
AutoFact: Coatomer alpha subunit-like protein n=2 Tax=Lotus japonicus RepID=Q70I39_LOTJA 4.0e-20
FL-Next: sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: coatomer subunit alpha-1-like 1.4863e-24
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain