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Assembly Name: uagpf v2.0

Name: nuclear chromatin

Term: GO:0000790  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene2923 uagpf v2.0 676
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: replication factor a1 0.0
Putative C-terminus
uagpf_v2_unigene3127 uagpf v2.0 317
AutoFact: methyl-CPG-binding domain protein 5 [Arabidopsis thaliana] sp|Q9SNC0.1|MBD5_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 5; Short=AtMBD5; Short=MBD05; AltName: Full=Methyl-CpG-binding protein MBD5 emb|CAB62328.1| putative protein [Arab 3.0e-13
FL-Next: tr=Methyl binding domain protein; subsp. trichocarpa). 0.0
Blast2go: methyl binding domain protein 1.7833e-22
Internal
uagpf_v2_unigene3926 uagpf v2.0 1358
AutoFact: Replication factor A 1, rfa1, putative n=1 Tax=Ricinus communis RepID=B9RK18_RICCO 0.0
FL-Next: tr=RPA 70kDa subunit; Pisum sativum (Garden pea). 0.0
Blast2go: replication factor a1 0.0
Putative C-terminus
uagpf_v2_unigene8446 uagpf v2.0 633
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: replication factor a1 0.0
C-terminus
uagpf_v2_unigene11315 uagpf v2.0 548
AutoFact: DNA mismatch repair protein MLH1 [Arabidopsis thaliana] emb|CAA10163.1| MLH1 protein [Arabidopsis thaliana] emb|CAB78038.1| MLH1 protein [Arabidopsis thaliana] gb|AEE82726.1| DNA mismatch repair protein MLH1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Os01g0958900 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dna mismatch repair protein mlh1 0.0
C-terminus
uagpf_v2_unigene11671 uagpf v2.0 348
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: replication factor a1 0.0
Putative Complete
uagpf_v2_unigene15030 uagpf v2.0 537
AutoFact: methyl-CPG-binding domain protein 5 [Arabidopsis thaliana] sp|Q9SNC0.1|MBD5_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 5; Short=AtMBD5; Short=MBD05; AltName: Full=Methyl-CpG-binding protein MBD5 emb|CAB62328.1| putative protein [Arab 3.0e-13
FL-Next: sp=Methyl-CpG-binding domain-containing protein 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: methyl binding domain protein 1.7833e-22
Putative N-terminus
uagpf_v2_unigene30009 uagpf v2.0 591
AutoFact: replication factor A1 [Arabidopsis thaliana] gb|AAD25150.1| putative replication protein A1 [Arabidopsis thaliana] dbj|BAC43293.1| putative replication protein A1 [Arabidopsis thaliana] gb|AAO64881.1| At2g06510 [Arabidopsis thaliana] gb|AEC06010.1| replic 7.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 2.11561e-32
N-terminus
uagpf_v2_unigene35248 uagpf v2.0 387
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: replication factor a1 0.0
Internal
uagpf_v2_unigene41131 uagpf v2.0 302
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
Blast2go: replication factor a1 0.0
unknown
uagpf_v2_unigene42420 uagpf v2.0 350
AutoFact: DNA mismatch repair protein MLH1 [Arabidopsis thaliana] emb|CAA10163.1| MLH1 protein [Arabidopsis thaliana] emb|CAB78038.1| MLH1 protein [Arabidopsis thaliana] gb|AEE82726.1| DNA mismatch repair protein MLH1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dna mismatch repair protein mlh1 0.0
Internal
uagpf_v2_unigene47058 uagpf v2.0 487
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: replication factor a1 0.0
Internal
uagpf_v2_unigene51850 uagpf v2.0 219
AutoFact: methyl-CPG-binding domain protein 5 [Arabidopsis thaliana] sp|Q9SNC0.1|MBD5_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 5; Short=AtMBD5; Short=MBD05; AltName: Full=Methyl-CpG-binding protein MBD5 emb|CAB62328.1| putative protein [Arab 3.0e-13
Blast2go: methyl binding domain protein 1.7833e-22
Putative coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain