Sustainpine_db
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Assembly Name: uagpf v2.0

Name: DNA mediated transformation

Term: GO:0009294  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene4 uagpf v2.0 473
• AutoFact: DNA repair helicase rad5,16, putative n=1 Tax=Ricinus communis RepID=B9SN70_RICCO 1.99993e-41
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna repair helicase 0.0
Internal
uagpf_v2_unigene800 uagpf v2.0 514
• AutoFact: Class II RPD3 type histone deacetylase protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TT63_PHYPA 2.0e-11
• Blast2go: histone deacetylase 15 7.58608e-12
unknown
uagpf_v2_unigene1395 uagpf v2.0 352
• AutoFact: Histone H2A.6 n=6 Tax=Spermatophyta RepID=H2A6_ARATH 6.0e-36
• Blast2go: histone h2a-like protein 5.01752e-37
unknown
uagpf_v2_unigene2465 uagpf v2.0 405
• AutoFact: Histone deacetylase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA 0.0
• Blast2go: histone deacetylase 0.0
unknown
uagpf_v2_unigene3239 uagpf v2.0 831
• AutoFact: Histone deacetylase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone deacetylase 0.0
N-terminus
uagpf_v2_unigene4669 uagpf v2.0 709
• AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 0.0
• FL-Next: sp=Histone deacetylase 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: histone deacetylase 0.0
N-terminus
uagpf_v2_unigene4798 uagpf v2.0 610
• AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
• FL-Next: sp=ATP-dependent DNA helicase DDM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Putative N-terminus
uagpf_v2_unigene4927 uagpf v2.0 1321
• AutoFact: Cellulose synthase-like A1 n=2 Tax=Pinaceae RepID=A3QT94_PINTA 0.0
• FL-Next: tr=Cellulose synthase-like A1; Pinus taeda (Loblolly pine). 0.0
• Blast2go: glucomannan 4-beta-mannosyltransferase 9-like 0.0
C-terminus
uagpf_v2_unigene5183 uagpf v2.0 829
• AutoFact: SET domain-containing protein (Fragment) n=2 Tax=Populus trichocarpa RepID=B9HSV4_POPTR 3.0e-32
• FL-Next: sp=Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: histone-lysine n- h3 lysine-9 specific suvh9 5.13925e-32
C-terminus
uagpf_v2_unigene7260 uagpf v2.0 2398
• AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: chromatin remodeling complex subunit 0.0
Complete
uagpf_v2_unigene8143 uagpf v2.0 1418
• AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone deacetylase 0.0
Complete
uagpf_v2_unigene8896 uagpf v2.0 517
• AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: global transcription factor group e4 0.0
Internal
uagpf_v2_unigene9227 uagpf v2.0 324
• AutoFact: Histone deacetylase (Fragment) n=2 Tax=Malpighiales RepID=B9IEX4_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone deacetylase 0.0
Internal
uagpf_v2_unigene9959 uagpf v2.0 903
• AutoFact: Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO 2.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone acetyltransferase 1.19481e-29
Putative Complete
uagpf_v2_unigene10236 uagpf v2.0 353
• AutoFact: transcription cofactor, putative; K04498 E1A/CREB-binding protein [EC:2.3.1.48] 7.9874e-44
• FL-Next: sp=Histone acetyltransferase HAC1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: histone acetyltransferase 0.0
C-terminus
uagpf_v2_unigene11884 uagpf v2.0 635
• AutoFact: Histone H2A.6 n=6 Tax=Spermatophyta RepID=H2A6_ARATH 7.0e-35
• FL-Next: sp=Histone H2A; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone h2a-like protein 1.96182e-44
Complete
uagpf_v2_unigene11991 uagpf v2.0 614
• AutoFact: Histone deacetylase (Fragment) n=2 Tax=Malpighiales RepID=B9IEX4_POPTR 0.0
• Blast2go: histone deacetylase 0.0
unknown
uagpf_v2_unigene12795 uagpf v2.0 871
• AutoFact: Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGL2_RICCO 0.0
• Blast2go: global transcription factor group e4 0.0
Coding
uagpf_v2_unigene12848 uagpf v2.0 619
• AutoFact: Nucleosome assembly protein family n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TVZ4_PHYPA 0.0
• FL-Next: tr=Nucleosome assembly protein family; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: nucleosome assembly protein 1 2 0.0
N-terminus
uagpf_v2_unigene15140 uagpf v2.0 680
• AutoFact: Elongator complex protein 3 n=16 Tax=Magnoliophyta RepID=ELP3_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone acetyltransferase 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain