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Assembly Name: uagpf v2.0

Name: mRNA binding

Term: GO:0003729  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene199 uagpf v2.0 888
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene678 uagpf v2.0 365
AutoFact: cleavage stimulation factor 77 [Arabidopsis thaliana] 0.0
Blast2go: plant rna cleavage stimulation 0.0
unknown
uagpf_v2_unigene1669 uagpf v2.0 761
AutoFact: Signal recognition particle 54 kDa protein 2 n=11 Tax=Magnoliophyta RepID=SR542_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: signal recognition particle 54 kda protein 3 0.0
Putative N-terminus
uagpf_v2_unigene4830 uagpf v2.0 645
AutoFact: mRNA-binding protein precursor [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mrna binding protein precursor-like 0.0
C-terminus
uagpf_v2_unigene7044 uagpf v2.0 418
AutoFact: mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana] dbj|BAC43684.1| unknown protein [Arabidopsis thaliana] gb|AAO63396.1| At5g13570 [Arabidopsis thaliana] gb|AED91912.1| mRNA-decapping enzyme subunit 2 [Arabidopsis thaliana] 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene7466 uagpf v2.0 570
AutoFact: Signal recognition particle 54 kDa protein 2 n=11 Tax=Magnoliophyta RepID=SR542_SOLLC 0.0
Blast2go: signal recognition particle 54 kda protein 3 0.0
Putative coding
uagpf_v2_unigene11759 uagpf v2.0 417
AutoFact: HIV Tat-specific factor 1 [Arabidopsis thaliana] emb|CAC01867.1| putative protein [Arabidopsis thaliana] gb|AAY25436.1| At5g16260 [Arabidopsis thaliana] dbj|BAF01062.1| hypothetical protein [Arabidopsis thaliana] gb|AED92266.1| HIV Tat-specific factor 1 [ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hiv tat-specific factor 1 homolog 0.0
N-terminus
uagpf_v2_unigene12171 uagpf v2.0 412
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 2.0e-40
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene17662 uagpf v2.0 652
AutoFact: Os01g0844800 protein n=3 Tax=Oryza sativa RepID=Q0JHT2_ORYSJ 0.0
Blast2go: pumilio homolog 1-like 0.0
unknown
uagpf_v2_unigene20016 uagpf v2.0 644
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 2.0e-40
Blast2go: protein 0.0
unknown
uagpf_v2_unigene26339 uagpf v2.0 520
AutoFact: mRNA-binding protein precursor [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mrna binding protein precursor-like 0.0
C-terminus
uagpf_v2_unigene27184 uagpf v2.0 376
AutoFact: cleavage stimulation factor 77 [Arabidopsis thaliana] 0.0
Blast2go: plant rna cleavage stimulation 0.0
unknown
uagpf_v2_unigene28214 uagpf v2.0 363
AutoFact: mRNA-binding protein precursor [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mrna binding protein precursor-like 0.0
N-terminus
uagpf_v2_unigene33398 uagpf v2.0 268
AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 3.0e-07
Blast2go: protein 0.0
unknown
uagpf_v2_unigene36090 uagpf v2.0 496
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 2.0e-40
Blast2go: protein 0.0
unknown
uagpf_v2_unigene39437 uagpf v2.0 374
AutoFact: Signal recognition particle 54 kDa protein 2 n=11 Tax=Magnoliophyta RepID=SR542_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: signal recognition particle 54 kda protein 3 0.0
Internal
uagpf_v2_unigene39777 uagpf v2.0 423
AutoFact: signal recognition particle subunit [Arabidopsis thaliana] sp|P37107.1|SR54C_ARATH RecName: Full=Signal recognition particle 54 kDa protein, chloroplastic; Short=54 chloroplast protein; Short=54CP; Short=SRP54; AltName: Full=FFC; Flags: Precursor emb|CAA7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: signal recognition particle 54 kda chloroplastic-like 0.0
Internal
uagpf_v2_unigene40076 uagpf v2.0 318
AutoFact: mRNA-binding protein precursor [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mrna binding protein precursor-like 0.0
Internal
uagpf_v2_unigene41621 uagpf v2.0 442
AutoFact: Plant RNA cleavage stimulation factor, putative n=1 Tax=Ricinus communis RepID=B9S078_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: mrna 3 -end-processing protein rna14 0.0
Putative N-terminus
uagpf_v2_unigene45180 uagpf v2.0 243
AutoFact: Signal recognition particle 54 kDa protein 2 n=11 Tax=Magnoliophyta RepID=SR542_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: signal recognition particle 54 kda protein 3 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain