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Assembly Name: uagpf v2.0

Name: nucleoid

Term: GO:0009295  Help

Source: GO from Blast2go

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene1760 uagpf v2.0 259
• AutoFact: putative UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; 54319-51679 [Arabidopsis thaliana] 0.0
• Blast2go: udp-n-acetylmuramoyl-l-alanyl-d-glutamate-- -diaminopimelate ligase-like 0.0
unknown
uagpf_v2_unigene3853 uagpf v2.0 920
• AutoFact: 50S ribosomal protein L29 [Arabidopsis thaliana] sp|Q9FJP3.1|RK29_ARATH RecName: Full=50S ribosomal protein L29, chloroplastic; AltName: Full=CL29; Flags: Precursor pdb|3BBO|Z Chain Z, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a 3.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 50s ribosomal protein l29 0.0
Complete
uagpf_v2_unigene4803 uagpf v2.0 848
• AutoFact: PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Vitis vinifera RepID=UPI0001985B62 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna gyrase subunit a 0.0
C-terminus
uagpf_v2_unigene8360 uagpf v2.0 473
• AutoFact: PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Vitis vinifera RepID=UPI0001985B62 0.0
• FL-Next: sp=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna gyrase subunit a 0.0
Internal
uagpf_v2_unigene12489 uagpf v2.0 642
• AutoFact: 50S ribosomal protein L12, chloroplastic n=2 Tax=Spinacia oleracea RepID=RK12_SPIOL 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ribosomal protein l12 1.4013e-45
C-terminus
uagpf_v2_unigene13400 uagpf v2.0 644
• AutoFact: Elongation factor Tu n=3 Tax=Spermatophyta RepID=A9NWL9_PICSI 0.0
• FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: elongation factor chloroplastic-like 0.0
N-terminus
uagpf_v2_unigene14844 uagpf v2.0 840
• AutoFact: 50S ribosomal protein L12, chloroplastic n=2 Tax=Spinacia oleracea RepID=RK12_SPIOL 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ribosomal protein l12 1.4013e-45
Putative Complete
uagpf_v2_unigene15721 uagpf v2.0 783
• AutoFact: Elongation factor Tu n=3 Tax=Spermatophyta RepID=A9NWL9_PICSI 0.0
• FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: elongation factor chloroplastic-like 0.0
C-terminus
uagpf_v2_unigene15988 uagpf v2.0 642
• AutoFact: putative thioredoxin [Solanum lycopersicum] 2.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 5.46815e-33
C-terminus
uagpf_v2_unigene27856 uagpf v2.0 439
• AutoFact: Superoxide dismutase n=1 Tax=Ginkgo biloba RepID=B8YNX9_GINBI 0.0
• Blast2go: chloroplast iron superoxide dismutase 0.0
unknown
uagpf_v2_unigene29099 uagpf v2.0 339
• AutoFact: DNA gyrase subunit B, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRB_NICBE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna gyrase subunit b 0.0
Internal
uagpf_v2_unigene30261 uagpf v2.0 295
• AutoFact: putative thioredoxin [Solanum lycopersicum] 2.0e-26
• Blast2go: protein 5.46815e-33
unknown
uagpf_v2_unigene30670 uagpf v2.0 239
• AutoFact: Superoxide dismutase n=1 Tax=Ginkgo biloba RepID=B8YNX9_GINBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: chloroplast iron superoxide dismutase 0.0
C-terminus
uagpf_v2_unigene36399 uagpf v2.0 324
• AutoFact: 50S ribosomal protein L12, chloroplastic n=2 Tax=Spinacia oleracea RepID=RK12_SPIOL 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ribosomal protein l12 1.4013e-45
C-terminus
uagpf_v2_unigene36811 uagpf v2.0 520
• AutoFact: PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Vitis vinifera RepID=UPI0001985B62 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna gyrase subunit a 0.0
Complete
uagpf_v2_unigene38308 uagpf v2.0 393
• AutoFact: Elongation factor Tu n=3 Tax=Spermatophyta RepID=A9NWL9_PICSI 0.0
• FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: elongation factor chloroplastic-like 0.0
Internal
uagpf_v2_unigene39204 uagpf v2.0 310
• AutoFact: 50S ribosomal protein L29, chloroplastic precursor [Zea mays] sp|Q9SWI6.1|RK29_MAIZE RecName: Full=50S ribosomal protein L29, chloroplastic; AltName: Full=CL29; Flags: Precursor gb|AAD50383.1|AF147725_1 ribosomal protein L29 [Zea mays] gb|ACF88436.1| unkn 5.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 50s ribosomal protein l29 8.23444e-28
Internal
uagpf_v2_unigene41282 uagpf v2.0 262
• AutoFact: DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE 0.0
• FL-Next: sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana. 0.0
• Blast2go: dna gyrase subunit a 0.0
Internal
uagpf_v2_unigene43665 uagpf v2.0 66
• AutoFact: DNA gyrase subunit B, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRB_NICBE 0.0
• Blast2go: dna gyrase subunit b 0.0
unknown
uagpf_v2_unigene44392 uagpf v2.0 348
• AutoFact: Elongation factor Tu n=4 Tax=Oryza sativa RepID=Q6ZI53_ORYSJ 0.0
• Blast2go: elongation factor tu 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain