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Assembly Name: uagpf v2.0

Name: cytosolic small ribosomal subunit

Term: GO:0022627  Help

Source: GO from Blast2go

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene33933 uagpf v2.0 194
• AutoFact: 40S ribosomal protein S20-1 n=12 Tax=rosids RepID=RS201_ARATH 0.0
• Blast2go: 40s ribosomal protein s20 0.0
unknown
uagpf_v2_unigene36047 uagpf v2.0 525
• AutoFact: 40S ribosomal protein S15a-1 n=32 Tax=Tracheophyta RepID=R15A1_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene36053 uagpf v2.0 522
• AutoFact: 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_192718.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|NP_564434.1| 40S ribosomal protein S18 [Arabidopsis thaliana] ref|XP_002872461.1| hypothetical protein ARALYDRAFT_489832 [Arabidopsis ly 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pointed first leaf 0.0
C-terminus
uagpf_v2_unigene36138 uagpf v2.0 367
• AutoFact: 40S ribosomal protein S19-1 [Arabidopsis thaliana] sp|Q9SGA6.1|RS191_ARATH RecName: Full=40S ribosomal protein S19-1 gb|AAF14828.1|AC011664_10 putative 40S ribosomal protein S19 [Arabidopsis thaliana] gb|AAK44092.1|AF370277_1 putative 40S ribosomal protei 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s19 0.0
C-terminus
uagpf_v2_unigene36926 uagpf v2.0 414
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 0.0
• Blast2go: 40s ribosomal protein s11 0.0
unknown
uagpf_v2_unigene42820 uagpf v2.0 232
• AutoFact: 40S ribosomal protein S20-1 [Arabidopsis thaliana] ref|NP_190089.2| 40S ribosomal protein S20-1 [Arabidopsis thaliana] ref|NP_001078781.1| 40S ribosomal protein S20-1 [Arabidopsis thaliana] sp|P49200.2|RS201_ARATH RecName: Full=40S ribosomal protein S20-1 0.0
• Blast2go: 40s ribosomal protein s20 0.0
Putative coding
uagpf_v2_unigene46351 uagpf v2.0 372
• AutoFact: Ribosomal protein S2 n=1 Tax=Polysphondylium pallidum RepID=D3B6G8_POLPA 9.0e-08
• FL-Next: tr=40S ribosomal protein S2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: 40s ribosomal protein s2 5.44527e-09
Putative N-terminus
uagpf_v2_unigene49574 uagpf v2.0 597
• AutoFact: 40S ribosomal protein S3a-2 [Arabidopsis thaliana] sp|Q42262.3|RS3A2_ARATH RecName: Full=40S ribosomal protein S3a-2 emb|CAA04689.1| Putative S-phase-specific ribosomal protein [Arabidopsis thaliana] emb|CAA18846.1| Putative S-phase-specific ribosomal pro 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein 0.0
C-terminus
uagpf_v2_unigene49590 uagpf v2.0 806
• AutoFact: 40S ribosomal protein S30 [Arabidopsis thaliana] ref|NP_200478.1| 40S ribosomal protein S30 [Arabidopsis thaliana] ref|NP_565458.1| 40S ribosomal protein S30 [Arabidopsis thaliana] ref|XP_002866160.1| 40S ribosomal protein S30 [Arabidopsis lyrata subsp. l 9.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s30 3.75936e-26
Complete
uagpf_v2_unigene49617 uagpf v2.0 887
• AutoFact: Ribosomal protein S27 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SLV7_PHYPA 2.0e-33
• FL-Next: sp=Ribosomal protein S27; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ribosomal protein s27 2.8026e-45
Complete
uagpf_v2_unigene51968 uagpf v2.0 645
• AutoFact: 40S ribosomal protein S3a-2 [Arabidopsis thaliana] sp|Q42262.3|RS3A2_ARATH RecName: Full=40S ribosomal protein S3a-2 emb|CAA04689.1| Putative S-phase-specific ribosomal protein [Arabidopsis thaliana] emb|CAA18846.1| Putative S-phase-specific ribosomal pro 0.0
• FL-Next: sp=Thioredoxin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein 0.0
C-terminus
uagpf_v2_unigene52325 uagpf v2.0 277
• AutoFact: 40S ribosomal protein S6 n=7 Tax=Spermatophyta RepID=RS6_ASPOF 0.0
• FL-Next: sp=40S ribosomal protein S6; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
uagpf_v2_unigene52574 uagpf v2.0 367
• AutoFact: 40S ribosomal protein S3a-2 [Arabidopsis thaliana] sp|Q42262.3|RS3A2_ARATH RecName: Full=40S ribosomal protein S3a-2 emb|CAA04689.1| Putative S-phase-specific ribosomal protein [Arabidopsis thaliana] emb|CAA18846.1| Putative S-phase-specific ribosomal pro 0.0
• FL-Next: sp=Thioredoxin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein 0.0
N-terminus
uagpf_v2_unigene52606 uagpf v2.0 967
• AutoFact: 40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s11 0.0
Complete
uagpf_v2_unigene52610 uagpf v2.0 377
• AutoFact: 40S ribosomal protein S29 n=4 Tax=Magnoliophyta RepID=RS29_ARATH 9.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s29 9.15945e-35
Putative Complete
uagpf_v2_unigene52627 uagpf v2.0 509
• AutoFact: 40S ribosomal protein S5-1 [Arabidopsis thaliana] ref|NP_001031502.1| 40S ribosomal protein S5-1 [Arabidopsis thaliana] sp|Q9ZUT9.1|RS51_ARATH RecName: Full=40S ribosomal protein S5-1 gb|AAC98068.1| 40S ribosomal protein S5 [Arabidopsis thaliana] gb|AAL24 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s5 0.0
C-terminus
uagpf_v2_unigene52791 uagpf v2.0 670
• AutoFact: 40S ribosomal protein S20-1 n=12 Tax=rosids RepID=RS201_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s20 0.0
Complete
uagpf_v2_unigene52806 uagpf v2.0 367
• AutoFact: 40S ribosomal protein S29 n=4 Tax=Magnoliophyta RepID=RS29_ARATH 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 40s ribosomal protein s29 3.2073e-37
Complete
uagpf_v2_unigene53173 uagpf v2.0 694
• AutoFact: 40S ribosomal protein S21 n=2 Tax=Picea sitchensis RepID=A9NJY4_PICSI 1.0e-38
• FL-Next: sp=40S ribosomal protein S21; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
uagpf_v2_unigene53178 uagpf v2.0 705
• AutoFact: 40S ribosomal protein S15a-1 n=32 Tax=Tracheophyta RepID=R15A1_ARATH 0.0
• Blast2go: protein 0.0
Putative coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain