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Assembly Name: uagpf v2.0

Name: double-stranded RNA binding

Term: GO:0003725  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene1554 uagpf v2.0 960
• AutoFact: Double-stranded RNA binding protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T6H7_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: double-stranded rna binding protein 0.0
N-terminus
uagpf_v2_unigene8581 uagpf v2.0 315
• AutoFact: Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: endoribonuclease dicer homolog 1-like 0.0
Internal
uagpf_v2_unigene8922 uagpf v2.0 263
• AutoFact: ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9RL32_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: atp-dependent rna 0.0
Internal
uagpf_v2_unigene10483 uagpf v2.0 278
• AutoFact: Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO 4.0e-08
• FL-Next: sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: endoribonuclease dicer homolog 3a-like 2.00543e-11
Internal
uagpf_v2_unigene13713 uagpf v2.0 636
• AutoFact: dsRNA-binding protein 2 [Arabidopsis thaliana] sp|Q9SKN2.1|DRB2_ARATH RecName: Full=Double-stranded RNA-binding protein 2; AltName: Full=dsRNA-binding protein 2; Short=AtDRB2 gb|AAD20688.1| expressed protein [Arabidopsis thaliana] gb|AAK59481.1| unknown p 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: double-stranded rna-binding protein 2-like 0.0
N-terminus
uagpf_v2_unigene25069 uagpf v2.0 281
• AutoFact: Histidyl-tRNA synthetase n=3 Tax=Andropogoneae RepID=B6TS97_MAIZE 0.0
• Blast2go: protein 0.0
unknown
uagpf_v2_unigene27691 uagpf v2.0 376
• AutoFact: Endoribonuclease Dicer homolog 1 n=4 Tax=Poaceae RepID=DCL1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: endoribonuclease dicer homolog 1-like 0.0
N-terminus
uagpf_v2_unigene28537 uagpf v2.0 504
• AutoFact: uncharacterized protein [Arabidopsis thaliana] dbj|BAA97379.1| unnamed protein product [Arabidopsis thaliana] gb|AAM67022.1| unknown [Arabidopsis thaliana] gb|AAO42327.1| unknown protein [Arabidopsis thaliana] gb|AAO64010.1| unknown protein [Arabidopsis t 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uncharacterized protein 0.0
C-terminus
uagpf_v2_unigene33475 uagpf v2.0 424
• AutoFact: DsRNA-specific nuclease dicer and related ribonuclease n=2 Tax=Physcomitrella patens RepID=A9RV91_PHYPA 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: endoribonuclease dicer 0.0
Internal
uagpf_v2_unigene33736 uagpf v2.0 246
• AutoFact: Endoribonuclease Dicer homolog 1 n=4 Tax=Poaceae RepID=DCL1_ORYSJ 0.0
• Blast2go: endoribonuclease dicer homolog 1-like 0.0
Coding
uagpf_v2_unigene36828 uagpf v2.0 458
• AutoFact: dsRNA-binding protein 5 [Arabidopsis thaliana] sp|Q8GY79.1|DRB5_ARATH RecName: Full=Double-stranded RNA-binding protein 5; AltName: Full=dsRNA-binding protein 5; Short=AtDRB5 dbj|BAC42450.1| unknown protein [Arabidopsis thaliana] gb|AAP75803.1| At5g41070 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: double-stranded rna-binding protein 2-like 8.05487e-35
N-terminus
uagpf_v2_unigene41223 uagpf v2.0 321
• AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: endoribonuclease dicer 0.0
Internal
uagpf_v2_unigene42277 uagpf v2.0 391
• AutoFact: Unassigned protein
• FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna polymerase ii c-terminal domain phosphatase-like 1-like 0.0
N-terminus
uagpf_v2_unigene47318 uagpf v2.0 172
• AutoFact: Dicer-like protein n=1 Tax=Populus trichocarpa RepID=B9GRS6_POPTR 0.0
• FL-Next: sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: endoribonuclease dicer 0.0
Internal
uagpf_v2_unigene47510 uagpf v2.0 370
• AutoFact: Double-stranded RNA binding protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9T6H7_PHYPA 0.0
• Blast2go: double-stranded rna binding protein 0.0
Putative coding
uagpf_v2_unigene47989 uagpf v2.0 307
• AutoFact: CAF protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: endoribonuclease dicer 0.0
Internal
uagpf_v2_unigene48257 uagpf v2.0 218
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: unknown [Picea sitchensis] 1.72608e-38
Internal
uagpf_v2_unigene49049 uagpf v2.0 274
• AutoFact: DEA(D/H)-box RNA helicase family protein n=5 Tax=Arabidopsis RepID=F4IM84_ARATH 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: probable atp-dependent rna helicase dhx36-like 0.0
Internal
uagpf_v2_unigene49359 uagpf v2.0 349
• AutoFact: Unassigned protein
• FL-Next: sp=RNA polymerase II C-terminal domain phosphatase-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna polymerase ii c-terminal domain phosphatase-like 1-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain