Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: uagpf v2.0

Name: RNA processing

Term: GO:0006396  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene12034 uagpf v2.0 517
AutoFact: Hydroxyproline-rich glycoprotein-like protein n=3 Tax=Arabidopsis RepID=Q8VYM7_ARATH 2.0e-16
Blast2go: hydroxyproline-rich glyco protein 0.0
unknown
uagpf_v2_unigene12866 uagpf v2.0 813
AutoFact: exosome complex component RRP41 [Arabidopsis thaliana] ref|NP_001118878.1| exosome complex component RRP41 [Arabidopsis thaliana] gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana] emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana] db 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex component rrp41 0.0
C-terminus
uagpf_v2_unigene15099 uagpf v2.0 379
AutoFact: Exosome complex exonuclease rrp43, putative n=1 Tax=Ricinus communis RepID=B9T1F1_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex component rrp43-like 0.0
C-terminus
uagpf_v2_unigene15172 uagpf v2.0 802
AutoFact: 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] ref|NP_850537.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana] dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein Sb08g006250; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: exosome complex exonuclease rrp42 0.0
C-terminus
uagpf_v2_unigene15229 uagpf v2.0 604
AutoFact: Ribonuclease III-like protein [Arabidopsis thaliana] gb|AAQ62445.1| At1g55140 [Arabidopsis thaliana] dbj|BAD42926.1| hypothetical protein [Arabidopsis thaliana] gb|AEE33190.1| Ribonuclease III-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene16935 uagpf v2.0 879
AutoFact: Hydroxyproline-rich glycoprotein-like protein n=3 Tax=Arabidopsis RepID=Q8VYM7_ARATH 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hydroxyproline-rich glyco protein 0.0
C-terminus
uagpf_v2_unigene18248 uagpf v2.0 667
AutoFact: Magnesium transporter CorA-like-like protein [Arabidopsis thaliana] gb|AAL85000.1| At2g04305/T23O15.7 [Arabidopsis thaliana] gb|AAO11621.1| At2g04305/T23O15.7 [Arabidopsis thaliana] gb|AEC05820.1| Magnesium transporter CorA-like-like protein [Arabidopsis 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene18811 uagpf v2.0 938
AutoFact: arabinose kinase [Arabidopsis thaliana] sp|O23461.1|ARAK_ARATH RecName: Full=L-arabinokinase; Short=AtISA1 emb|CAB10392.1| galactokinase like protein [Arabidopsis thaliana] emb|CAB78655.1| galactokinase like protein [Arabidopsis thaliana] gb|AEE83696.1| a 0.0
FL-Next: sp=L-arabinokinase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: galactokinase like protein 0.0
Internal
uagpf_v2_unigene19020 uagpf v2.0 689
AutoFact: heterogeneous nuclear ribonucleoprotein R [Gallus gallus] ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Meleagris gallopavo] 4.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein r 0.0
Putative Complete
uagpf_v2_unigene24997 uagpf v2.0 570
AutoFact: 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] ref|NP_850537.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana] dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis tha 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: exosome complex exonuclease rrp42 0.0
Internal
uagpf_v2_unigene25054 uagpf v2.0 448
AutoFact: exosome complex component RRP41 [Arabidopsis thaliana] ref|NP_001118878.1| exosome complex component RRP41 [Arabidopsis thaliana] gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana] emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana] db 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex component rrp41 0.0
N-terminus
uagpf_v2_unigene26453 uagpf v2.0 444
AutoFact: Pre-mRNA splicing factor [Solanum tuberosum] 1.0e-06
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: uncharacterized protein loc100246698 5.7585e-19
Internal
uagpf_v2_unigene26583 uagpf v2.0 384
AutoFact: cleavage and polyadenylation specificity factor CPSF30 [Arabidopsis thaliana] sp|A9LNK9.1|CPSF_ARATH RecName: Full=Cleavage and polyadenylation specificity factor CPSF30; AltName: Full=Zinc finger CCCH domain-containing protein 11; Short=AtC3H11 gb|ABX260 0.0
FL-Next: Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 0.0
Blast2go: cleavage and polyadenylation specificity factor cpsf30 0.0
Internal
uagpf_v2_unigene28635 uagpf v2.0 234
AutoFact: arabinose kinase [Arabidopsis thaliana] sp|O23461.1|ARAK_ARATH RecName: Full=L-arabinokinase; Short=AtISA1 emb|CAB10392.1| galactokinase like protein [Arabidopsis thaliana] emb|CAB78655.1| galactokinase like protein [Arabidopsis thaliana] gb|AEE83696.1| a 0.0
FL-Next: sp=L-arabinokinase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: galactokinase like protein 0.0
Internal
uagpf_v2_unigene29384 uagpf v2.0 257
AutoFact: Hydroxyproline-rich glycoprotein-like protein n=3 Tax=Arabidopsis RepID=Q8VYM7_ARATH 2.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hydroxyproline-rich glyco protein 0.0
Internal
uagpf_v2_unigene30845 uagpf v2.0 381
AutoFact: heterogeneous nuclear ribonucleoprotein R [Gallus gallus] ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Meleagris gallopavo] 4.0e-19
FL-Next: tr=Putative uncharacterized protein Sb08g019140; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: heterogeneous nuclear ribonucleoprotein r 0.0
Internal
uagpf_v2_unigene31433 uagpf v2.0 497
AutoFact: 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] ref|NP_850537.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana] dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: exosome complex exonuclease rrp42 0.0
Putative N-terminus
uagpf_v2_unigene31859 uagpf v2.0 512
AutoFact: Exosome complex exonuclease rrp45, putative n=1 Tax=Ricinus communis RepID=B9SYQ9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: 3 -5 -exoribonuclease cer7 protein 0.0
N-terminus
uagpf_v2_unigene32829 uagpf v2.0 186
AutoFact: pre-mRNA splicing factor, putative 1.0e-15
Blast2go: protein high chlorophyll fluorescent 107 2.35817e-17
unknown
uagpf_v2_unigene37714 uagpf v2.0 268
AutoFact: Magnesium transporter CorA-like-like protein [Arabidopsis thaliana] gb|AAL85000.1| At2g04305/T23O15.7 [Arabidopsis thaliana] gb|AAO11621.1| At2g04305/T23O15.7 [Arabidopsis thaliana] gb|AEC05820.1| Magnesium transporter CorA-like-like protein [Arabidopsis 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain