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Assembly Name: uagpf v2.0

Name: positive regulation of transcription, DNA-dependent

Term: GO:0045893  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene28879 uagpf v2.0 381
• AutoFact: plastid transcriptionally active 6 [Arabidopsis thaliana] ref|NP_001031076.1| plastid transcriptionally active 6 [Arabidopsis thaliana] gb|AAD41412.1|AC007727_1 EST gb|N95925 comes from this gene [Arabidopsis thaliana] gb|AAG40066.1|AF324715_1 At1g21600 [ 0.0
• FL-Next: tr=Expressed protein; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: plastid transcriptionally active 6 0.0
Internal
uagpf_v2_unigene30750 uagpf v2.0 338
• AutoFact: plastid transcriptionally active 2 [Arabidopsis thaliana] sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74850, chloroplastic; AltName: Full=Protein PLASTID TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor gb|AAD55291.1| 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
uagpf_v2_unigene30941 uagpf v2.0 421
• AutoFact: plastid transcriptionally active 12 [Arabidopsis thaliana] gb|AEC09002.1| plastid transcriptionally active 12 [Arabidopsis thaliana] 3.0e-22
• Blast2go: plastid transcriptionally active 12 4.93397e-42
Coding
uagpf_v2_unigene31316 uagpf v2.0 291
• AutoFact: replication factor C1 [Arabidopsis thaliana] emb|CAC34494.1| replication factor C large subunit-like protein [Arabidopsis thaliana] gb|AAT47816.1| At5g22010 [Arabidopsis thaliana] gb|AED92968.1| replication factor C1 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: replication factor c subunit 1-like 0.0
Internal
uagpf_v2_unigene34065 uagpf v2.0 209
• AutoFact: Inducer of CBF expression 1 (Fragment) n=1 Tax=Picea abies RepID=B2KZF3_PICAB 0.0
• Blast2go: transcription factor ice1 0.0
Coding
uagpf_v2_unigene34598 uagpf v2.0 154
• AutoFact: HD domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJ13_MALDO 2.0e-12
• FL-Next: sp=Pathogenesis-related homeodomain protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: pathogenesis-related homeodomain protein 1.0688e-15
Internal
uagpf_v2_unigene35871 uagpf v2.0 93
• AutoFact: plastid transcriptionally active 6 [Arabidopsis thaliana] ref|NP_001031076.1| plastid transcriptionally active 6 [Arabidopsis thaliana] gb|AAD41412.1|AC007727_1 EST gb|N95925 comes from this gene [Arabidopsis thaliana] gb|AAG40066.1|AF324715_1 At1g21600 [ 0.0
• Blast2go: plastid transcriptionally active 6 0.0
unknown
uagpf_v2_unigene36323 uagpf v2.0 540
• AutoFact: putative MYC transcription factor [Oryza sativa Japonica Group] 1.99965e-42
• Blast2go: transcription factor 0.0
unknown
uagpf_v2_unigene36702 uagpf v2.0 482
• AutoFact: Histone acetyltransferase gcn5, putative n=1 Tax=Ricinus communis RepID=B9S4R6_RICCO 0.0
• Blast2go: histone acetyltransferase 0.0
unknown
uagpf_v2_unigene37868 uagpf v2.0 576
• AutoFact: Histone acetyltransferase gcn5, putative n=1 Tax=Ricinus communis RepID=B9S4R6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: histone acetyltransferase 0.0
Internal
uagpf_v2_unigene38134 uagpf v2.0 505
• AutoFact: transcription factor-like protein [Arabidopsis thaliana] gb|AED90905.1| transcription factor-like protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=NF-X1-type zinc finger protein NFXL2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nuclear transcription x-box 0.0
C-terminus
uagpf_v2_unigene39097 uagpf v2.0 336
• AutoFact: plastid transcriptionally active 2 [Arabidopsis thaliana] sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74850, chloroplastic; AltName: Full=Protein PLASTID TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor gb|AAD55291.1| 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
uagpf_v2_unigene39515 uagpf v2.0 443
• AutoFact: Myosin vIII, putative n=1 Tax=Ricinus communis RepID=B9SCN9_RICCO 9.94922e-44
• FL-Next: tr=Myosin VIII-1; Nicotiana benthamiana. 0.0
• Blast2go: myosin-like protein 2.63444e-43
Internal
uagpf_v2_unigene39918 uagpf v2.0 372
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R902_RICCO 4.0e-39
• FL-Next: sp=Pentatricopeptide repeat-containing protein At1g74850, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: pentatricopeptide repeat-containing protein chloroplastic-like 1.4013e-45
Putative N-terminus
uagpf_v2_unigene42706 uagpf v2.0 279
• AutoFact: Pathogenesis-related homeodomain protein [Arabidopsis thaliana] sp|P48785.1|PRH_ARATH RecName: Full=Pathogenesis-related homeodomain protein; Short=PRHA gb|AAA32843.1| homeodomain protein [Arabidopsis thaliana] gb|AAC49836.1| PRHA [Arabidopsis thaliana] e 1.0e-11
• FL-Next: sp=Pathogenesis-related homeodomain protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: pathogenesis-related homeodomain protein 7.47012e-18
Internal
uagpf_v2_unigene45189 uagpf v2.0 285
• AutoFact: putative DNA-binding protein [Arabidopsis thaliana] emb|CAB77810.1| putative DNA-binding protein [Arabidopsis thaliana] emb|CAD29664.1| homeodomain protein 14 [Arabidopsis thaliana] gb|ABH04479.1| At4g03250 [Arabidopsis thaliana] 3.0e-33
• Blast2go: homeobox-leucine zipper family protein 0.0
Coding
uagpf_v2_unigene45232 uagpf v2.0 416
• AutoFact: transcription factor-like protein [Arabidopsis thaliana] gb|AED90905.1| transcription factor-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nuclear transcription x-box 0.0
Putative C-terminus
uagpf_v2_unigene45387 uagpf v2.0 252
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RY52_RICCO 0.0
• Blast2go: dna binding 0.0
Putative coding
uagpf_v2_unigene45657 uagpf v2.0 264
• AutoFact: Pathogenesis-related homeodomain protein [Arabidopsis thaliana] sp|P48785.1|PRH_ARATH RecName: Full=Pathogenesis-related homeodomain protein; Short=PRHA gb|AAA32843.1| homeodomain protein [Arabidopsis thaliana] gb|AAC49836.1| PRHA [Arabidopsis thaliana] e 3.0e-30
• FL-Next: sp=Pathogenesis-related homeodomain protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: pathogenesis-related homeodomain protein 1.6812e-39
Internal
uagpf_v2_unigene46106 uagpf v2.0 424
• AutoFact: MAPKK n=2 Tax=Solanoideae RepID=Q66MH6_SOLLC 3.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: mitogen-activated protein kinase kinase 5 6.75685e-18
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain