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Assembly Name: uagpf v2.0

Name: RNA metabolic process

Term: GO:0016070  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene1528 uagpf v2.0 1133
AutoFact: PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Monodelphis domestica] 6.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u7 small nuclear rna associated 0.0
Complete
uagpf_v2_unigene3777 uagpf v2.0 385
AutoFact: ATP-dependent helicase, putative n=1 Tax=Ricinus communis RepID=B9SWF5_RICCO 1.0e-17
FL-Next: tr=ATP-dependent helicase, putative; Ricinus communis (Castor bean). 0.0
Blast2go: dna repair and recombination protein rad54-like 2.5728e-22
Internal
uagpf_v2_unigene5158 uagpf v2.0 652
AutoFact: Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: regulator of nonsense transcripts 2-like 0.0
Internal
uagpf_v2_unigene6150 uagpf v2.0 646
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin fusion protein 0.0
C-terminus
uagpf_v2_unigene6989 uagpf v2.0 539
AutoFact: SRI domain containing protein 2.0e-05
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger ccch domain-containing protein 0.0
C-terminus
uagpf_v2_unigene8025 uagpf v2.0 585
AutoFact: Eukaryotic translation initiation factor 4G n=2 Tax=Carica papaya RepID=E3V0H9_CARPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: translation initiation factor eif-4f 0.0
Internal
uagpf_v2_unigene11033 uagpf v2.0 539
AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9R8Z2_RICCO 2.0e-37
FL-Next: sp=Pentatricopeptide repeat-containing protein At1g74900, mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: pentatricopeptide repeat-containing protein mitochondrial-like 7.34139e-39
C-terminus
uagpf_v2_unigene13720 uagpf v2.0 677
AutoFact: Eukaryotic translation initiation factor 4G n=2 Tax=Carica papaya RepID=E3V0H9_CARPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: translation initiation factor eif-4f 0.0
C-terminus
uagpf_v2_unigene13788 uagpf v2.0 830
AutoFact: SRI domain containing protein 2.0e-05
Blast2go: zinc finger ccch domain-containing protein 0.0
Coding
uagpf_v2_unigene13964 uagpf v2.0 518
AutoFact: Ribonuclease n=1 Tax=Picea sitchensis RepID=D5AEE7_PICSI 0.0
FL-Next: sp=Ribonuclease; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribonuclease h2 subunit a 0.0
C-terminus
uagpf_v2_unigene14876 uagpf v2.0 1581
AutoFact: eukaryotic translation initiation factor 5 [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 5 0.0
N-terminus
uagpf_v2_unigene16032 uagpf v2.0 763
AutoFact: eukaryotic translation initiation factor 5 [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: eukaryotic translation initiation factor 5 0.0
C-terminus
uagpf_v2_unigene16710 uagpf v2.0 537
AutoFact: Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 [Medicago truncatula] 0.0
Blast2go: regulator of nonsense transcripts 2-like 0.0
unknown
uagpf_v2_unigene19236 uagpf v2.0 573
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin fusion protein 0.0
Complete
uagpf_v2_unigene20527 uagpf v2.0 659
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin a-52 residue ribosomal protein fusion product 1 0.0
Complete
uagpf_v2_unigene26810 uagpf v2.0 445
AutoFact: [L] COG4581 Superfamily II RNA helicase 1.96182e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: superkiller viralicidic activity 2-like 2-like 0.0
Internal
uagpf_v2_unigene29434 uagpf v2.0 496
AutoFact: translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gb|AAC12836.1| putative translation initiation factor eIF-2B epsilon subunit [Arabidopsis thaliana] gb|AAM98194.1| putative translation initiation factor eIF-2B epsilon subunit [A 0.0
FL-Next: tr=eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: translation initiation factor eif-2b epsilon subunit 0.0
Internal
uagpf_v2_unigene29650 uagpf v2.0 399
AutoFact: Pseudouridine synthase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SJM4_VITVI 3.0e-31
FL-Next: sp=Putative tRNA pseudouridine synthase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: trna pseudouridine synthase-like 9.1229e-37
Internal
uagpf_v2_unigene32020 uagpf v2.0 727
AutoFact: RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana] gb|AAC67203.2| expressed protein [Arabidopsis thaliana] gb|AAO64196.1| putative DEAD/DEAH box RNA helicase (HUA ENHANCER2) [Arabidopsis thaliana] gb|AEC06028.1| RNA helicase, ATP-depend 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hua enhancer 2 0.0
C-terminus
uagpf_v2_unigene33610 uagpf v2.0 244
AutoFact: Ubiquitin-60S ribosomal protein L40-1 n=69 Tax=Eukaryota RepID=RL40A_ARATH 0.0
Blast2go: ubiquitin a-52 residue ribosomal protein fusion product 1 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain