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Assembly Name: uagpf v2.0

Name: intracellular part

Term: GO:0044424  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene29623 uagpf v2.0 468
AutoFact: Cytochrome b6-f complex iron-sulfur subunit n=2 Tax=Picea sitchensis RepID=A9NLM7_PICSI 0.0
FL-Next: sp=Cytochrome b6-f complex iron-sulfur subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rieske fe-s precursor protein 0.0
C-terminus
uagpf_v2_unigene29747 uagpf v2.0 515
AutoFact: Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] gb|AED91455.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: transcription elongation expressed 0.0
Internal
uagpf_v2_unigene30166 uagpf v2.0 324
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
Blast2go: uncharacterized protein 0.0
unknown
uagpf_v2_unigene32033 uagpf v2.0 446
AutoFact: Tubulin beta-4 chain n=11 Tax=Eukaryota RepID=TBB4_ORYSJ 0.0
Blast2go: beta chain 0.0
unknown
uagpf_v2_unigene32045 uagpf v2.0 608
AutoFact: Unassigned protein
Blast2go: protein 5.81814e-22
unknown
uagpf_v2_unigene34757 uagpf v2.0 168
AutoFact: Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] gb|AED91455.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription elongation expressed 0.0
C-terminus
uagpf_v2_unigene35982 uagpf v2.0 494
AutoFact: Unassigned protein
Blast2go: protein 5.81814e-22
Putative coding
uagpf_v2_unigene36040 uagpf v2.0 495
AutoFact: Polyubiquitin-C n=2 Tax=Sus scrofa RepID=UBC_PIG 0.0
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Blast2go: polyubiquitin 10 0.0
Putative Complete
uagpf_v2_unigene37084 uagpf v2.0 417
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 5.81814e-22
Internal
uagpf_v2_unigene37217 uagpf v2.0 402
AutoFact: S15/NS1, RNA-binding protein [Arabidopsis thaliana] gb|AAF82151.1|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi|6730725 from Arabidopsis thaliana BAC T21F11 gb|AC018849 and contains a Ribosomal Protein S15 PF|00312 domain gb|AAK32782.1 0.0
FL-Next: tr=Structural constituent of ribosome, putative; Ricinus communis (Castor bean). 0.0
Blast2go: s15 rna-binding protein 0.0
C-terminus
uagpf_v2_unigene37827 uagpf v2.0 510
AutoFact: Armadillo/beta-catenin-like repeat-containing protein n=5 Tax=Arabidopsis RepID=Q8W498_ARATH 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene39477 uagpf v2.0 478
AutoFact: ubiquitin protein ligase E3A (human papilloma virus E6-associated protein, Angelman syndrome) [Xenopus (Silurana) tropicalis] gb|AAH67999.1| ubiquitin protein ligase E3A (human papilloma virus E6-associated protein, Angelman syndrome) [Xenopus (Silurana) 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene39561 uagpf v2.0 144
AutoFact: Cytochrome b6-f complex iron-sulfur subunit n=2 Tax=Picea sitchensis RepID=A9NLM7_PICSI 0.0
FL-Next: sp=Cytochrome b6-f complex iron-sulfur subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rieske fe-s precursor protein 0.0
Internal
uagpf_v2_unigene39608 uagpf v2.0 301
AutoFact: Armadillo/beta-catenin-like repeat-containing protein n=5 Tax=Arabidopsis RepID=Q8W498_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene40071 uagpf v2.0 155
AutoFact: Condensin complex subunit 1 (Fragment) n=1 Tax=Vitis vinifera RepID=D7TIM0_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: condensin complex subunit 1 0.0
Internal
uagpf_v2_unigene41741 uagpf v2.0 420
AutoFact: root initiation defective 3 protein [Arabidopsis thaliana] emb|CAB66397.1| putative protein [Arabidopsis thaliana] gb|AAO42870.1| At3g49180 [Arabidopsis thaliana] dbj|BAE99952.1| hypothetical protein [Arabidopsis thaliana] gb|AEE78508.1| root initiation d 0.0
FL-Next: tr=WD-repeat protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: wd repeat-containing protein 18-like 0.0
Putative N-terminus
uagpf_v2_unigene43595 uagpf v2.0 376
AutoFact: Condensin complex subunit 1 (Fragment) n=1 Tax=Vitis vinifera RepID=D7TIM0_VITVI 0.0
Blast2go: condensin complex subunit 1 0.0
Coding
uagpf_v2_unigene43655 uagpf v2.0 211
AutoFact: Os07g0602200 protein n=2 Tax=Oryza sativa RepID=Q0D4V4_ORYSJ 6.0e-17
Blast2go: histone deacetylase 1.27908e-16
Coding
uagpf_v2_unigene44146 uagpf v2.0 291
AutoFact: coatomer subunit alpha-1 [Arabidopsis thaliana] sp|Q94A40.2|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb|AAC28519.1| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb|U24105 fro 2.0e-09
FL-Next: sp=Coatomer subunit alpha-2; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: coatomer subunit alpha-1 1.45457e-10
Internal
uagpf_v2_unigene44718 uagpf v2.0 164
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
Blast2go: uncharacterized protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain