Sustainpine_db
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Assembly Name: uagpf v2.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene14347 uagpf v2.0 691
• AutoFact: putative RNA-binding protein RBP37 [Oryza sativa Japonica Group] dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group] dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza s 0.0
• Blast2go: rna-binding protein rbp37 0.0
unknown
uagpf_v2_unigene14396 uagpf v2.0 1044
• AutoFact: prephenate dehydratase [Ipomoea trifida] dbj|BAF37790.1| hypothetical protein [Ipomoea trifida] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene14399 uagpf v2.0 1787
• AutoFact: DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb|AEE74400.1| DEAD-box ATP-dependent RNA heli 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 14 0.0
C-terminus
uagpf_v2_unigene14515 uagpf v2.0 545
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
unknown
uagpf_v2_unigene14582 uagpf v2.0 1156
• AutoFact: Zinc finger CCCH domain-containing protein 14 n=2 Tax=Oryza sativa RepID=C3H14_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 14-like 0.0
C-terminus
uagpf_v2_unigene14775 uagpf v2.0 485
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAG30979.1|AC012396_15 RNA-binding glycine-rich protein, putative [Arabidopsis thaliana] gb|AAY17418.1| At1g73530 [Arabidopsis thaliana] gb|ABI49457.1| At1g73530 [Arabidopsis thaliana] gb| 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
N-terminus
uagpf_v2_unigene15099 uagpf v2.0 379
• AutoFact: Exosome complex exonuclease rrp43, putative n=1 Tax=Ricinus communis RepID=B9T1F1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: exosome complex component rrp43-like 0.0
C-terminus
uagpf_v2_unigene15172 uagpf v2.0 802
• AutoFact: 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] ref|NP_850537.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana] gb|AAG40370.1|AF325018_1 AT3g07750 [Arabidopsis thaliana] dbj|BAC43581.1| putative 3' exoribonuclease [Arabidopsis tha 0.0
• FL-Next: tr=Putative uncharacterized protein Sb08g006250; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
• Blast2go: exosome complex exonuclease rrp42 0.0
C-terminus
uagpf_v2_unigene15229 uagpf v2.0 604
• AutoFact: Ribonuclease III-like protein [Arabidopsis thaliana] gb|AAQ62445.1| At1g55140 [Arabidopsis thaliana] dbj|BAD42926.1| hypothetical protein [Arabidopsis thaliana] gb|AEE33190.1| Ribonuclease III-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene15231 uagpf v2.0 848
• AutoFact: Poly(A) polymerase alpha, putative n=1 Tax=Ricinus communis RepID=B9SFV5_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: poly polymerase 0.0
N-terminus
uagpf_v2_unigene15301 uagpf v2.0 793
• AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
• Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
N-terminus
uagpf_v2_unigene15306 uagpf v2.0 482
• AutoFact: DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana] sp|Q9FNM7.2|RH26_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 26 gb|AED91329.1| DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana] 0.0
• Blast2go: rna helicase 0.0
unknown
uagpf_v2_unigene15680 uagpf v2.0 560
• AutoFact: Flowering time control protein-like protein (Fragment) n=1 Tax=Picea sitchensis RepID=E0ZL31_PICSI 7.0e-11
• Blast2go: flowering time control protein 2.21199e-12
unknown
uagpf_v2_unigene15687 uagpf v2.0 617
• AutoFact: putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] gb|AEE87011.1| putative RNA-binding protein containing KH domain protein [Arabidopsis thaliana] 1.0e-15
• Blast2go: rna-binding protein containing kh domain protein 0.0
unknown
uagpf_v2_unigene15689 uagpf v2.0 542
• AutoFact: DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] gb|AAM26693.1| At5g26743 [Arabidopsis thaliana] gb|AAO42779.1| At5g26743 [Arabidopsis thaliana] gb|AED93564.1| DEAD-box ATP-dependent RNA helicase 3 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase chloroplastic-like 0.0
C-terminus
uagpf_v2_unigene15694 uagpf v2.0 1984
• AutoFact: putative arginine/serine-rich protein [Arabidopsis thaliana] 9.99967e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein arginine serine-rich 45 0.0
Putative Complete
uagpf_v2_unigene15896 uagpf v2.0 635
• AutoFact: Zinc finger CCCH domain-containing protein 14 n=2 Tax=Oryza sativa RepID=C3H14_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 14-like 0.0
Putative N-terminus
uagpf_v2_unigene15918 uagpf v2.0 482
• AutoFact: PREDICTED: similar to RNA recognition motif (RRM)-containing protein n=1 Tax=Vitis vinifera RepID=UPI000198579B 3.0e-34
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: rna binding 2.8026e-45
Internal
uagpf_v2_unigene15980 uagpf v2.0 833
• AutoFact: polypyrimidine tract-binding protein 2 [Arabidopsis thaliana] sp|Q9FGL9.1|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2 dbj|BAB08421.1| polypyrimidine tract-binding RNA transport protein-like [Arabidopsis thaliana] gb|AAU90050.1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene15985 uagpf v2.0 775
• AutoFact: DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp|Q9SQV1.1|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb|AAF08584.1|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb|AEE74400.1| DEAD-box ATP-dependent RNA heli 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 14 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain