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Assembly Name: uagpf v2.0

Name: RNA binding

Term: GO:0003723  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene8558 uagpf v2.0 247
AutoFact: CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] emb|CAB75492.1| putative protein [Arabidopsis thaliana] gb|AEE78053.1| CCR4-NOT transcription complex subunit 4 [Arabidopsis thaliana] 6.0e-29
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: ccr4-not transcription complex subunit 1.16942e-32
Internal
uagpf_v2_unigene8637 uagpf v2.0 519
AutoFact: Contains similarity to RNA adenosine deaminase gene, exon 15 from Homo sapiens gb|U75503. It contains the adenosine-deaminase (editase) domain PF|02137 [Arabidopsis thaliana] 2.0e-21
FL-Next: tr=H0306F12.5 protein; Oryza sativa (Rice). 0.0
Blast2go: adenosine-deaminase domain-containing protein 3.73313e-40
Putative C-terminus
uagpf_v2_unigene8718 uagpf v2.0 732
AutoFact: suppressor of variegation1 causing pseudouridine synthase-like protein [Arabidopsis thaliana] gb|AAM66944.1| unknown [Arabidopsis thaliana] dbj|BAC42334.1| unknown protein [Arabidopsis thaliana] gb|AEC09639.1| suppressor of variegation1 causing pseudourid 0.0
FL-Next: tr=Putative uncharacterized protein At2g39150; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene8954 uagpf v2.0 653
AutoFact: Dihydroorotate dehydrogenase (quinone), mitochondrial n=3 Tax=Arabidopsis RepID=PYRD_ARATH 3.0e-31
Blast2go: dihydroorotate dehydrogenase 6.24232e-35
unknown
uagpf_v2_unigene9054 uagpf v2.0 392
AutoFact: RNA pseudourine synthase 1 n=1 Tax=Arabidopsis thaliana RepID=PUS1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna pseudourine synthase 1-like 0.0
Internal
uagpf_v2_unigene9529 uagpf v2.0 348
AutoFact: Sterol regulatory element-binding protein site 2 protease, putative n=1 Tax=Ricinus communis RepID=B9S7Z4_RICCO 0.0
Blast2go: sterol regulatory element-binding protein site 2 0.0
Putative coding
uagpf_v2_unigene9646 uagpf v2.0 1118
AutoFact: splicing factor 3B subunit 4 [Arabidopsis thaliana] gb|AAD12222.1| putative spliceosome associated protein [Arabidopsis thaliana] gb|AAN12991.1| putative spliceosome-associated protein [Arabidopsis thaliana] gb|AEC06776.1| splicing factor 3B subunit 4 [Ar 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 4-like 0.0
Putative Complete
uagpf_v2_unigene9826 uagpf v2.0 811
AutoFact: DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana] sp|Q9FNM7.2|RH26_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 26 gb|AED91329.1| DEAD-box ATP-dependent RNA helicase 26 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna helicase 0.0
Internal
uagpf_v2_unigene10165 uagpf v2.0 264
AutoFact: pfam00665, rve, Integrase core domain 5.0e-12
FL-Next: tr=Gag-pol polyprotein, putative; Asparagus officinalis (Garden asparagus). 0.0
Blast2go: gag-pol polyprotein 0.0
C-terminus
uagpf_v2_unigene10241 uagpf v2.0 417
AutoFact: Maturase (Fragment) n=1 Tax=Pinus sp. Qiu 94013 RepID=Q9T671_9CONI 0.0
FL-Next: tr=MatR; Abies nephrolepis. Mitochondrion. 0.0
Blast2go: maturase 0.0
N-terminus
uagpf_v2_unigene10434 uagpf v2.0 724
AutoFact: Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease [Medicago truncatula] 0.0
Blast2go: exosome complex component rrp46 0.0
unknown
uagpf_v2_unigene10628 uagpf v2.0 466
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 0.0
Internal
uagpf_v2_unigene10692 uagpf v2.0 708
AutoFact: Homeodomain-like; Uridylate kinase [Medicago truncatula] 6.0e-28
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: uridylate kinase 7.33348e-30
C-terminus
uagpf_v2_unigene10770 uagpf v2.0 421
AutoFact: La protein 1 [Arabidopsis thaliana] gb|AAL07086.1| unknown protein [Arabidopsis thaliana] gb|AEE86109.1| La protein 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: la protein 1 0.0
Internal
uagpf_v2_unigene10794 uagpf v2.0 453
AutoFact: 50S ribosomal protein L19-1 [Arabidopsis thaliana] sp|Q8W463.1|RK191_ARATH RecName: Full=50S ribosomal protein L19-1, chloroplastic; Flags: Precursor gb|AAL32899.1| Unknown protein [Arabidopsis thaliana] gb|AAM10187.1| unknown protein [Arabidopsis thalian 1.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l19 0.0
C-terminus
uagpf_v2_unigene10987 uagpf v2.0 691
AutoFact: MEI2-like protein 4 [Arabidopsis thaliana] sp|Q9LYN7.1|AML4_ARATH RecName: Full=Protein MEI2-like 4; Short=AML4; AltName: Full=MEI2-like protein 4 emb|CAB87285.1| Mei2-like protein [Arabidopsis thaliana] dbj|BAE99028.1| Mei2-like protein [Arabidopsis thal 0.0
Blast2go: protein mei2-like 4-like 0.0
Putative coding
uagpf_v2_unigene11045 uagpf v2.0 310
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Populus trichocarpa x Populus deltoides. 0.0
Blast2go: rna recognition motif family expressed 6.78625e-26
Internal
uagpf_v2_unigene11119 uagpf v2.0 1825
AutoFact: Poly(A) polymerase alpha, putative n=1 Tax=Ricinus communis RepID=B9SFV5_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly polymerase 0.0
C-terminus
uagpf_v2_unigene11179 uagpf v2.0 403
AutoFact: tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] gb|AEE30910.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis thaliana] 1.00053e-42
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: trna nucleotidyltransferase (cca-adding enzyme) 2.8026e-44
Internal
uagpf_v2_unigene11347 uagpf v2.0 448
AutoFact: Unassigned protein
FL-Next: sp=Pumilio homolog 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain