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Assembly Name: uagpf v2.0

Name: nuclear mRNA splicing, via spliceosome

Term: GO:0000398  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene26617 uagpf v2.0 582
AutoFact: RNA binding protein n=3 Tax=Andropogoneae RepID=B6TN55_MAIZE 0.0
Blast2go: rna binding protein 0.0
unknown
uagpf_v2_unigene26931 uagpf v2.0 353
AutoFact: putative U1 snRNP 70K protein [Trifolium pratense] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u1 small nuclear ribonucleoprotein 70 kda-like 0.0
N-terminus
uagpf_v2_unigene30025 uagpf v2.0 403
AutoFact: RNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9T403_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein Sb03g033240; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: rna-binding protein 5 10 0.0
Internal
uagpf_v2_unigene30709 uagpf v2.0 481
AutoFact: PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein-1) (APP-1) isoform 17 [Canis familiaris] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: poly binding cytoplasmic 1 0.0
Putative N-terminus
uagpf_v2_unigene31628 uagpf v2.0 1071
AutoFact: putative pre-mRNA splicing factor [Oryza sativa Japonica Group] gb|AAP54456.1| U5 snRNP-associated 102 kDa protein, putative, expressed [Oryza sativa Japonica Group] gb|EAY79087.1| hypothetical protein OsI_34194 [Oryza sativa Indica Group] 0.0
FL-Next: tr=Pre-mRNA splicing factor, putative; Ricinus communis (Castor bean). 0.0
Blast2go: pre-mrna splicing factor 0.0
Internal
uagpf_v2_unigene35674 uagpf v2.0 221
AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: pre-mrna-processing-splicing factor 8-like 0.0
Internal
uagpf_v2_unigene36315 uagpf v2.0 428
AutoFact: Predicted protein n=2 Tax=Hordeum vulgare RepID=F2E947_HORVD 3.00004e-41
Blast2go: gaga-binding transcriptional activator 0.0
unknown
uagpf_v2_unigene43431 uagpf v2.0 366
AutoFact: RNA-binding protein, putative n=1 Tax=Ricinus communis RepID=B9T403_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 5 10 0.0
Putative N-terminus
uagpf_v2_unigene43458 uagpf v2.0 436
AutoFact: Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] gb|AAD55467.1|AC009322_7 Putative splicing factor Prp8 [Arabidopsis thaliana] gb|AEE36353.1| Pre-mRNA-processing-splicing factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein Sb10g004680; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: pre-mrna-processing-splicing factor 8-like 0.0
Internal
uagpf_v2_unigene43735 uagpf v2.0 340
AutoFact: putative splicing factor Prp8 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Pre-mRNA-processing-splicing factor, putative; Ricinus communis (Castor bean). 0.0
Blast2go: pre-mrna-processing-splicing factor 0.0
Internal
uagpf_v2_unigene46461 uagpf v2.0 350
AutoFact: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Arabidopsis thaliana] sp|O22212.1|PRP4_ARATH RecName: Full=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; AltName: Full=Protein EMBRYO DEFECTIVE 2776 gb|AAB84332.1| putative small nuclear 0.0
FL-Next: sp=U4/U6 small nuclear ribonucleoprotein PRP4-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: u4 u6 small nuclear ribonucleoprotein prp4-like 0.0
Internal
uagpf_v2_unigene48074 uagpf v2.0 293
AutoFact: PREDICTED: similar to Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein-1) (APP-1) isoform 17 [Canis familiaris] 0.0
Blast2go: poly binding cytoplasmic 1 0.0
Coding
uagpf_v2_unigene52964 uagpf v2.0 371
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: arginine serine-rich-splicing factor rsp40 0.0
N-terminus
uagpf_v2_unigene53002 uagpf v2.0 430
AutoFact: putative arginine/serine-rich protein [Arabidopsis thaliana] 9.99967e-42
Blast2go: protein arginine serine-rich 45 0.0
Coding
uagpf_v2_unigene54960 uagpf v2.0 389
AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
Blast2go: arginine serine-rich-splicing factor rsp40-like 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain