Sustainpine_db
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Assembly Name: uagpf v2.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene9477 uagpf v2.0 254
• AutoFact: methyltransferase / nucleic acid binding protein [Arabidopsis thaliana] gb|AAK25997.1|AF360287_1 unknown protein [Arabidopsis thaliana] dbj|BAB02202.1| unnamed protein product [Arabidopsis thaliana] gb|AAK93720.1| unknown protein [Arabidopsis thaliana] gb 0.0
• FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: trna guanosine-2 -o-methyltransferase trm11 homolog 0.0
Internal
uagpf_v2_unigene9491 uagpf v2.0 391
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AEE35845.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
N-terminus
uagpf_v2_unigene9582 uagpf v2.0 522
• AutoFact: Signal recognition particle subunit srp72, putative n=1 Tax=Ricinus communis RepID=B9RMK3_RICCO 0.0
• FL-Next: tr=Signal recognition particle subunit srp72, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: signal recognition particle subunit srp72 0.0
N-terminus
uagpf_v2_unigene9700 uagpf v2.0 1148
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 8 dbj|BAD25226.1| putative RNA helicase [Oryza sativa Japonica Group] dbj|BAG92832.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE57460.1| hypothetical protein OsJ_07688 [Oryza sativa Japon 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 8-like 0.0
C-terminus
uagpf_v2_unigene9973 uagpf v2.0 241
• AutoFact: Phytochrome A-associated F-box protein, putative n=1 Tax=Ricinus communis RepID=B9SAQ8_RICCO 0.0
• Blast2go: phytochrome a-associated f-box protein 0.0
Coding
uagpf_v2_unigene9977 uagpf v2.0 473
• AutoFact: Phytochrome A-associated F-box protein, putative n=1 Tax=Ricinus communis RepID=B9SAQ8_RICCO 0.0
• FL-Next: sp=Phytochrome A-associated F-box protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: phytochrome a-associated f-box protein 0.0
C-terminus
uagpf_v2_unigene10016 uagpf v2.0 351
• AutoFact: CCHC-type zinc knuckle protein [Arabidopsis thaliana] emb|CAB86673.1| putative protein [Arabidopsis thaliana] gb|AAL38752.1| unknown protein [Arabidopsis thaliana] gb|AAM91719.1| unknown protein [Arabidopsis thaliana] gb|AEE77756.1| CCHC-type zinc knuckle 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc knuckle (cchc-type) family protein 0.0
C-terminus
uagpf_v2_unigene10164 uagpf v2.0 295
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TI03_VITVI 2.0e-39
• FL-Next: sp=DNA-directed RNA polymerase; Pinus pinaster (Maritime pine). Plastid; Chloroplast. 0.0
• Blast2go: dna-directed rna polymerase i subunit rpa1-like 1.4013e-45
Internal
uagpf_v2_unigene10317 uagpf v2.0 507
• AutoFact: NUFIP1 domain containing protein 7.0e-11
• Blast2go: nuclear fragile x mental retardation-interacting protein 1 3.7978e-41
Putative coding
uagpf_v2_unigene10320 uagpf v2.0 746
• AutoFact: zinc finger CCCH domain-containing protein 24 [Arabidopsis thaliana] sp|Q8L7S3.1|C3H24_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 24; Short=AtC3H24 gb|AAM91097.1| At2g28450/T1B3.3 [Arabidopsis thaliana] gb|AAN72304.1| At2g28450/T1B3.3 0.0
• FL-Next: sp=Zinc finger CCCH domain-containing protein 24; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: zinc finger ccch domain-containing protein 24-like 0.0
Internal
uagpf_v2_unigene10374 uagpf v2.0 466
• AutoFact: Os08g0486200 protein n=3 Tax=Oryza sativa RepID=Q6ZDR7_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene10399 uagpf v2.0 709
• AutoFact: Ank_2 domain containing protein 5.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 30-like 0.0
Internal
uagpf_v2_unigene10450 uagpf v2.0 1543
• AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SYU7_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 37-like 0.0
C-terminus
uagpf_v2_unigene10526 uagpf v2.0 498
• AutoFact: Histone acetyltransferase n=5 Tax=rosids RepID=B9H794_POPTR 0.0
• Blast2go: histone acetyltransferase 0.0
unknown
uagpf_v2_unigene10718 uagpf v2.0 602
• AutoFact: transcription initiation factor TFIID subunit D5 [Arabidopsis thaliana] ref|NP_849592.1| transcription initiation factor TFIID subunit D5 [Arabidopsis thaliana] ref|NP_001030969.1| transcription initiation factor TFIID subunit D5 [Arabidopsis thaliana] gb 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: transcription initiation factor tfiid subunit d5 0.0
N-terminus
uagpf_v2_unigene10726 uagpf v2.0 598
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene11023 uagpf v2.0 625
• AutoFact: transcription factor Pur-alpha 1 [Arabidopsis thaliana] gb|AAL31888.1|AF419556_1 At2g32080/F22D22.17 [Arabidopsis thaliana] gb|AEC08632.1| transcription factor Pur-alpha 1 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene11041 uagpf v2.0 404
• AutoFact: pfam00013, KH_1, KH domain 8.0e-12
• FL-Next: tr=Nucleic acid binding protein, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: kh domain-containing protein at4g18375-like 0.0
Internal
uagpf_v2_unigene11065 uagpf v2.0 1153
• AutoFact: DEAD-box ATP-dependent RNA helicase 6 n=6 Tax=BEP clade RepID=RH6_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dead-box atp-dependent rna helicase 8-like 0.0
C-terminus
uagpf_v2_unigene11266 uagpf v2.0 562
• AutoFact: 3'-5' exoribonuclease 1 [Gallus gallus] emb|CAG31592.1| hypothetical protein RCJMB04_8i1 [Gallus gallus] 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uncharacterized exonuclease domain-containing protein at3g15140-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain