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Assembly Name: uagpf v2.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene17017 uagpf v2.0 624
• AutoFact: pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 1.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: werner syndrome-like exonuclease-like 0.0
C-terminus
uagpf_v2_unigene17096 uagpf v2.0 620
• AutoFact: DEAD-box ATP-dependent RNA helicase 5 n=2 Tax=Oryza sativa RepID=RH5_ORYSJ 0.0
• Blast2go: rna helicase 0.0
unknown
uagpf_v2_unigene17161 uagpf v2.0 1182
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
N-terminus
uagpf_v2_unigene17375 uagpf v2.0 337
• AutoFact: Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Medicago truncatula] 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: u4 u6 small nuclear ribonucleoprotein prp31-like 0.0
C-terminus
uagpf_v2_unigene17646 uagpf v2.0 691
• AutoFact: translation initiation factor 3 subunit B [Arabidopsis thaliana] sp|Q9C5Z1.1|EIF3B_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit B; Short=eIF3b; AltName: Full=eIF-3-eta; AltName: Full=eIF3 p110; AltName: Full=p82 gb|AAG53615.1|AF2 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: eukaryotic translation initiation factor 3 subunit b-like 0.0
Internal
uagpf_v2_unigene17681 uagpf v2.0 1370
• AutoFact: Os08g0486200 protein n=3 Tax=Oryza sativa RepID=Q6ZDR7_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene17900 uagpf v2.0 623
• AutoFact: Alba DNA/RNA-binding protein [Arabidopsis thaliana] gb|AAF88114.1|AC021043_7 Unknown protein [Arabidopsis thaliana] gb|AAK97729.1| At1g29250/F28N24_8 [Arabidopsis thaliana] gb|AAL31130.1| At1g29250/F28N24_8 [Arabidopsis thaliana] gb|AAM63005.1| unknown [A 3.0e-39
• Blast2go: protein 0.0
unknown
uagpf_v2_unigene17921 uagpf v2.0 1297
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
• FL-Next: sp=Glycine-rich RNA-binding protein GRP1A; Sinapis alba (White mustard) (Brassica hirta). 0.0
• Blast2go: protein 0.0
Complete
uagpf_v2_unigene17973 uagpf v2.0 1013
• AutoFact: putative RNA-binding protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
N-terminus
uagpf_v2_unigene18032 uagpf v2.0 1227
• AutoFact: Herpes_gp2 domain containing protein 7.0e-05
• FL-Next: sp=Zinc finger CCCH domain-containing protein 32; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: zinc finger c-x8-c-x5-c-x3-h type family protein 0.0
Putative N-terminus
uagpf_v2_unigene18262 uagpf v2.0 1054
• AutoFact: DEAD box protein P68 [Pisum sativum] 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene18304 uagpf v2.0 743
• AutoFact: peptide alpha-N-acetyltransferase [Arabidopsis thaliana] dbj|BAB10599.1| unnamed protein product [Arabidopsis thaliana] gb|AAK96745.1| Unknown protein [Arabidopsis thaliana] gb|AAL47392.1| unknown protein [Arabidopsis thaliana] gb|AAM64579.1| silencing gr 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: silencing group b protein 0.0
Complete
uagpf_v2_unigene18415 uagpf v2.0 771
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAC42069.1| unknown protein [Arabidopsis thaliana] gb|AEE75401.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
C-terminus
uagpf_v2_unigene18455 uagpf v2.0 629
• AutoFact: pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 9.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: werner syndrome-like exonuclease-like 0.0
C-terminus
uagpf_v2_unigene18502 uagpf v2.0 895
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein q 0.0
unknown
uagpf_v2_unigene18545 uagpf v2.0 717
• AutoFact: Ribonucleoprotein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RNK5_RICCO 9.99995e-41
• Blast2go: 28 kda chloroplastic-like 0.0
unknown
uagpf_v2_unigene18600 uagpf v2.0 926
• AutoFact: putative small nuclear ribonucleoprotein [Arabidopsis thaliana] ref|XP_002886267.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp. lyrata] gb|AAD08943.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana] gb|AAM64436.1| p 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein e 0.0
Complete
uagpf_v2_unigene18639 uagpf v2.0 1133
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene18888 uagpf v2.0 370
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein q 0.0
Internal
uagpf_v2_unigene18900 uagpf v2.0 302
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAC42069.1| unknown protein [Arabidopsis thaliana] gb|AEE75401.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain