Sustainpine_db
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Assembly Name: uagpf v2.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene13563 uagpf v2.0 645
• AutoFact: Predicted protein n=2 Tax=Physcomitrella patens RepID=A9S3P5_PHYPA 6.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene13575 uagpf v2.0 526
• AutoFact: RNA helicase [Arabidopsis thaliana] gb|AAD39319.1|AC007258_8 Very similar to helicases [Arabidopsis thaliana] dbj|BAD44599.1| hypothetical protein [Arabidopsis thaliana] gb|AEE33616.1| RNA helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: skiv2l2 protein 0.0
C-terminus
uagpf_v2_unigene13727 uagpf v2.0 495
• AutoFact: putative actin depolymerizing factor [Sorghum bicolor] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene13788 uagpf v2.0 830
• AutoFact: SRI domain containing protein 2.0e-05
• Blast2go: zinc finger ccch domain-containing protein 0.0
Coding
uagpf_v2_unigene13790 uagpf v2.0 945
• AutoFact: putative small nuclear ribonucleoprotein D1 [Brassica napus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein sm d1 0.0
Complete
uagpf_v2_unigene13832 uagpf v2.0 395
• AutoFact: Signal recognition particle subunit srp72, putative n=1 Tax=Ricinus communis RepID=B9RMK3_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: signal recognition particle subunit srp72 0.0
Internal
uagpf_v2_unigene13879 uagpf v2.0 489
• AutoFact: Copper ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3E8_RICCO 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: serine arginine repetitive matrix protein 1 0.0
N-terminus
uagpf_v2_unigene14025 uagpf v2.0 696
• AutoFact: putative DNA binding protein [Trifolium pratense] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding post-transcriptional regulator csx1-like 0.0
C-terminus
uagpf_v2_unigene14107 uagpf v2.0 833
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_974317.1| RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAA97064.1| unnamed protein product [Arabidopsis thaliana] gb|AAL36202.1| putative RNA-binding protein [Ar 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
C-terminus
uagpf_v2_unigene14133 uagpf v2.0 668
• AutoFact: ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] emb|CAL55992.1| ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] 0.0
• Blast2go: protein 0.0
unknown
uagpf_v2_unigene14151 uagpf v2.0 481
• AutoFact: pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 9.0e-19
• Blast2go: werner syndrome-like exonuclease-like 0.0
Putative coding
uagpf_v2_unigene14153 uagpf v2.0 1657
• AutoFact: RNA-binding protein [Medicago truncatula] 5.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
uagpf_v2_unigene14260 uagpf v2.0 553
• AutoFact: ASF/SF2-like pre-mRNA splicing factor SRP32' [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich splicing 0.0
N-terminus
uagpf_v2_unigene14338 uagpf v2.0 637
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AEE35845.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• Blast2go: rna recognition motif-containing protein 0.0
unknown
uagpf_v2_unigene14345 uagpf v2.0 960
• AutoFact: putative RNA-binding protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Putative C-terminus
uagpf_v2_unigene14542 uagpf v2.0 542
• AutoFact: Argonaute/Zwille-like protein n=2 Tax=Picea RepID=Q4PLA9_PICGL 0.0
• Blast2go: argonaute protein group 0.0
unknown
uagpf_v2_unigene14702 uagpf v2.0 400
• AutoFact: RecName: Full=DEAD-box ATP-dependent RNA helicase 13 dbj|BAA95778.1| ATP-dependent RNA helicase [Arabidopsis thaliana] 0.0
• Blast2go: dead-box atp-dependent rna helicase 13 0.0
unknown
uagpf_v2_unigene14705 uagpf v2.0 619
• AutoFact: DNA-damage-repair/toleration protein DRT111 [Arabidopsis thaliana] sp|P42698.2|DR111_ARATH RecName: Full=DNA-damage-repair/toleration protein DRT111, chloroplastic; Flags: Precursor gb|AAF19751.1|AC009917_10 Strong similarity to gi|1169200 DNA-Damage-Repa 0.0
• FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna-damage-repair toleration protein drt111 0.0
C-terminus
uagpf_v2_unigene14706 uagpf v2.0 845
• AutoFact: pfam00013, KH_1, KH domain 8.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: kh domain-containing protein at4g18375-like 0.0
C-terminus
uagpf_v2_unigene14864 uagpf v2.0 935
• AutoFact: Methionine aminopeptidase n=1 Tax=Picea sitchensis RepID=D5AE22_PICSI 0.0
• FL-Next: sp=Methionine aminopeptidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: methionine aminopeptidase 1a 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain