Sustainpine_db
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Assembly Name: uagpf v2.0

Name: transcription, DNA-dependent

Term: GO:0006351  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene11922 uagpf v2.0 583
AutoFact: 15.9 kDa subunit of RNA polymerase II n=8 Tax=core eudicotyledons RepID=O48890_ARATH 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: kda subunit of rna polymerase ii 0.0
C-terminus
uagpf_v2_unigene11929 uagpf v2.0 523
AutoFact: WRKY transcription factor 1 (Fragment) n=1 Tax=Picea abies RepID=B2KZJ7_PICAB 0.0
Blast2go: transcription factor wrky 0.0
Putative coding
uagpf_v2_unigene12417 uagpf v2.0 749
AutoFact: auxin-responsive protein IAA13 [Arabidopsis thaliana] ref|NP_001118434.1| auxin-responsive protein IAA13 [Arabidopsis thaliana] gb|AAG48763.1|AF332399_1 auxin-regulated protein IAA13 [Arabidopsis thaliana] gb|AAC49054.1| IAA13 [Arabidopsis thaliana] gb|AA 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: auxin-responsive protein iaa13 0.0
C-terminus
uagpf_v2_unigene12427 uagpf v2.0 521
AutoFact: Homeobox protein LUMINIDEPENDENS, putative n=1 Tax=Ricinus communis RepID=B9S3T8_RICCO 3.0e-09
FL-Next: sp=Homeobox protein LUMINIDEPENDENS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: luminidependens 6.94779e-10
N-terminus
uagpf_v2_unigene12846 uagpf v2.0 427
AutoFact: heat shock factor protein hsf8-related [Glycine max] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: heat shock transcription factor 1 0.0
Putative N-terminus
uagpf_v2_unigene12931 uagpf v2.0 399
AutoFact: CTP_transf_2 domain containing protein 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: phosphopantetheine adenylyltransferase 0.0
N-terminus
uagpf_v2_unigene13114 uagpf v2.0 502
AutoFact: WRKY transcription factor PmWRKY115 (Fragment) n=3 Tax=Pinus monticola RepID=E6Y3E7_PINMO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: wrky transcription factor 0.0
Internal
uagpf_v2_unigene13418 uagpf v2.0 506
AutoFact: RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] gb|AAF63141.1|AC011001_11 hypothetical protein [Arabidopsis thaliana] gb|AAL38764.1| putative RNA polymerase [Arabidopsis thaliana] gb|AAN13199.1| putative RNA polymerase [Ara 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene13635 uagpf v2.0 852
AutoFact: transcription factor (E2F) [Chenopodium rubrum] 0.0
FL-Next: Isoform 2 of Transcription factor E2FB OS=Arabidopsis thaliana GN=E2FB 0.0
Blast2go: transcription factor e2f 0.0
Internal
uagpf_v2_unigene13877 uagpf v2.0 490
AutoFact: pfam06217, GAGA_bind, GAGA binding protein-like family 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: basic pentacysteine 6 0.0
Internal
uagpf_v2_unigene14408 uagpf v2.0 863
AutoFact: CTP_transf_2 domain containing protein 2.0e-09
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: phosphopantetheine adenylyltransferase 0.0
C-terminus
uagpf_v2_unigene14515 uagpf v2.0 545
AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
unknown
uagpf_v2_unigene15061 uagpf v2.0 911
AutoFact: DNA-directed RNA polymerase 1B, mitochondrial n=3 Tax=Nicotiana RepID=RPO1B_TOBAC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: t7 bacteriophage-type single subunit rna polymerase 0.0
C-terminus
uagpf_v2_unigene15103 uagpf v2.0 621
AutoFact: DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] dbj|BAA97230.1| unnamed protein product [Arabidopsis thaliana] gb|AAQ89628.1| At5g23710 [Arabidopsis thaliana] gb|AED93201.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] 8.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-directed rna polymerase iii subunit rpc6-like 0.0
C-terminus
uagpf_v2_unigene15301 uagpf v2.0 793
AutoFact: RecName: Full=DNA-directed RNA polymerase II subunit RPB7; Short=RNA polymerase II subunit B7 gb|AAA34005.1| RNA polymerase II [Glycine max] gb|ACU13766.1| unknown [Glycine max] 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB7; Glycine max (Soybean) (Glycine hispida). 0.0
Blast2go: dna-directed rna polymerase ii subunit rpb7 0.0
N-terminus
uagpf_v2_unigene15307 uagpf v2.0 1031
AutoFact: putative ribosome recycling factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ribosome recycling factor 0.0
Complete
uagpf_v2_unigene15338 uagpf v2.0 630
AutoFact: GATA transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RQG2_RICCO 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene15584 uagpf v2.0 594
AutoFact: WRKY family transcription factor [Arabidopsis thaliana] gb|AAQ65182.1| At4g31805 [Arabidopsis thaliana] dbj|BAE99346.1| hypothetical protein [Arabidopsis thaliana] gb|AEE85962.1| WRKY family transcription factor [Arabidopsis thaliana] 3.0e-07
Blast2go: protein 4.64927e-10
unknown
uagpf_v2_unigene16106 uagpf v2.0 829
AutoFact: WRKY transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S4T8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene16274 uagpf v2.0 550
AutoFact: pfam06217, GAGA_bind, GAGA binding protein-like family 0.0
Blast2go: basic pentacysteine 6 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain