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Assembly Name: uagpf v2.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Blast2go

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene7945 uagpf v2.0 444
• AutoFact: sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gb|AAM13041.1| unknown protein [Arabidopsis thaliana] gb|AAO30091.1| unknown protein [Arabidopsis thaliana] gb|AEE76088.1| sequence-specific DNA binding transcription factor [Arabid 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: sequence-specific dna binding transcription factor 0.0
N-terminus
uagpf_v2_unigene7971 uagpf v2.0 363
• AutoFact: Transcription factor AP2-EREBP n=1 Tax=Lotus japonicus RepID=B3IX32_LOTJA 7.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ethylene-responsive transcription factor 1a 0.0
N-terminus
uagpf_v2_unigene8035 uagpf v2.0 595
• AutoFact: response regulator 8 [Zea mays] dbj|BAB41137.1| response regulator 8 [Zea mays] gb|ACG47663.1| two-component response regulator ARR1 [Zea mays] 0.0
• Blast2go: type-b response regulator 0.0
unknown
uagpf_v2_unigene8043 uagpf v2.0 458
• AutoFact: phosphatase like protein [Arabidopsis thaliana] emb|CAB78583.1| phosphatase like protein [Arabidopsis thaliana] 0.0
• FL-Next: sp=Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: protein 0.0
Internal
uagpf_v2_unigene8103 uagpf v2.0 523
• AutoFact: transcription factor DP1 [Populus tremula x Populus tremuloides] gb|AAP73785.1| DP1 [Populus tremula x Populus tremuloides] 0.0
• Blast2go: transcription factor e2 dimerization partner protein 0.0
unknown
uagpf_v2_unigene8152 uagpf v2.0 1215
• AutoFact: Chitin-inducible gibberellin-responsive protein, putative n=1 Tax=Ricinus communis RepID=B9S2N0_RICCO 0.0
• Blast2go: scarecrow-like protein 1-like 0.0
unknown
uagpf_v2_unigene8209 uagpf v2.0 523
• AutoFact: Ebs-bah-phd domain-containing protein n=7 Tax=Magnoliophyta RepID=B9IAJ0_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ebs-bah-phd domain-containing protein 0.0
N-terminus
uagpf_v2_unigene8242 uagpf v2.0 641
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SGW9_RICCO 9.80909e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: two-component response regulator ehd1 0.0
C-terminus
uagpf_v2_unigene8360 uagpf v2.0 473
• AutoFact: PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Vitis vinifera RepID=UPI0001985B62 0.0
• FL-Next: sp=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: dna gyrase subunit a 0.0
Internal
uagpf_v2_unigene8539 uagpf v2.0 491
• AutoFact: Ocs element-binding factor, putative n=1 Tax=Ricinus communis RepID=B9R7Z2_RICCO 3.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ocs element-binding 0.0
C-terminus
uagpf_v2_unigene8682 uagpf v2.0 788
• AutoFact: Ethylene transcription factor n=2 Tax=Fagus sylvatica RepID=Q70AB2_FAGSY 6.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ap2 domain containing protein 2.25605e-23
N-terminus
uagpf_v2_unigene8697 uagpf v2.0 481
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RMJ9_RICCO 0.0
• Blast2go: dna-binding protein 0.0
unknown
uagpf_v2_unigene8709 uagpf v2.0 552
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SQC7_RICCO 2.0e-19
• Blast2go: protein 1.45455e-42
unknown
uagpf_v2_unigene8801 uagpf v2.0 298
• AutoFact: sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gb|AAM13041.1| unknown protein [Arabidopsis thaliana] gb|AAO30091.1| unknown protein [Arabidopsis thaliana] gb|AEE76088.1| sequence-specific DNA binding transcription factor [Arabid 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: sequence-specific dna binding transcription factor 0.0
N-terminus
uagpf_v2_unigene8880 uagpf v2.0 382
• AutoFact: pfam03638, CXC, Tesmin/TSO1-like CXC domain 1.0e-20
• Blast2go: cysteine-rich polycomb-like protein 0.0
Putative coding
uagpf_v2_unigene8955 uagpf v2.0 449
• AutoFact: transcription factor DP1 [Populus tremula x Populus tremuloides] gb|AAP73785.1| DP1 [Populus tremula x Populus tremuloides] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription factor e2 dimerization partner protein 0.0
Internal
uagpf_v2_unigene8998 uagpf v2.0 374
• AutoFact: transcription factor TCP4 [Arabidopsis thaliana] ref|NP_850589.1| transcription factor TCP4 [Arabidopsis thaliana] ref|NP_001189896.1| transcription factor TCP4 [Arabidopsis thaliana] sp|Q8LPR5.1|TCP4_ARATH RecName: Full=Transcription factor TCP4; AltName 9.0e-34
• Blast2go: transcription factor tcp4 4.49701e-39
unknown
uagpf_v2_unigene9190 uagpf v2.0 423
• AutoFact: Phytochrome n=1 Tax=Marchantia paleacea var. diptera RepID=Q9AVP3_MARPA 0.0
• FL-Next: sp=Phytochrome; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: phytochrome 0.0
Internal
uagpf_v2_unigene9340 uagpf v2.0 639
• AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RMJ9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-binding protein 0.0
C-terminus
uagpf_v2_unigene9435 uagpf v2.0 937
• AutoFact: TPA_inf: class IV HD-Zip protein HDZ43 [Physcomitrella patens] 0.0
• FL-Next: tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: homeobox-leucine zipper protein meristem l1 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain