Sustainpine_db
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Assembly Name: uagpf v2.0

Name: regulation of transcription, DNA-dependent

Term: GO:0006355  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene39101 uagpf v2.0 356
AutoFact: DNA helicase INO80 complex-like 1 [Arabidopsis thaliana] sp|Q8RXS6.2|INO80_ARATH RecName: Full=DNA helicase INO80; Short=AtINO80; AltName: Full=Putative DNA helicase INO80 complex homolog 1 gb|AEE79637.1| DNA helicase INO80 complex-like 1 [Arabidopsis tha 0.0
FL-Next: sp=DNA helicase INO80; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
uagpf_v2_unigene39111 uagpf v2.0 230
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene39154 uagpf v2.0 196
AutoFact: transcription initiation factor TFIIH subunit H3 [Arabidopsis thaliana] gb|AAM61618.1| unknown [Arabidopsis thaliana] gb|ABE77412.1| At1g18340 [Arabidopsis thaliana] gb|AEE29705.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis thaliana] 0.0
Blast2go: protein 0.0
unknown
uagpf_v2_unigene39198 uagpf v2.0 284
AutoFact: putative origin recognition complex 1 [Oryza sativa Japonica Group] dbj|BAG95868.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE65230.1| hypothetical protein OsJ_20389 [Oryza sativa Japonica Group] 0.0
Blast2go: origin recognition complex subunit 1-like 0.0
Putative coding
uagpf_v2_unigene39344 uagpf v2.0 364
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S7K7_RICCO 0.0
Blast2go: probable lysine-specific demethylase jmj14-like 0.0
unknown
uagpf_v2_unigene39480 uagpf v2.0 338
AutoFact: Transcription factor SCREAM2 n=2 Tax=Arabidopsis RepID=SCRM2_ARATH 6.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: inducer of cbf expression 3.25179e-37
C-terminus
uagpf_v2_unigene39624 uagpf v2.0 450
AutoFact: Myc2 bHLH protein n=2 Tax=Vitis vinifera RepID=A6NAB4_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh13 0.0
Internal
uagpf_v2_unigene39683 uagpf v2.0 354
AutoFact: Inositol hexaphosphate kinase, putative n=1 Tax=Ricinus communis RepID=B9RA37_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: inositol polyphosphate multikinase alpha 0.0
N-terminus
uagpf_v2_unigene39764 uagpf v2.0 350
AutoFact: ATP-synt_B multi-domain protein 6.0e-06
Blast2go: nucleic acid binding 0.0
unknown
uagpf_v2_unigene39830 uagpf v2.0 405
AutoFact: Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL 0.0
FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: leucine-rich repeat receptor-like protein kinase 0.0
Internal
uagpf_v2_unigene39974 uagpf v2.0 255
AutoFact: SET domain protein SDG111 [Zea mays] gb|AAO32934.2| SET domain protein SDG111 [Zea mays] 0.0
FL-Next: sp=Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1; Nicotiana tabacum (Common tobacco). 0.0
Blast2go: histone-lysine n- h3 lysine-9 specific suvh1 0.0
Internal
uagpf_v2_unigene40048 uagpf v2.0 540
AutoFact: nuclear transcription factor Y subunit B-3 [Arabidopsis thaliana] sp|O23310.1|NFYB3_ARATH RecName: Full=Nuclear transcription factor Y subunit B-3; Short=AtNF-YB-3; AltName: Full=Transcriptional activator HAP3C emb|CAB10233.1| CCAAT-binding transcription 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear transcription factor y subunit b-3 0.0
Putative N-terminus
uagpf_v2_unigene40131 uagpf v2.0 315
AutoFact: class II KNOX homeobox transcription factor [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: homeobox protein knotted-1-like 3-like 0.0
Internal
uagpf_v2_unigene40424 uagpf v2.0 370
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA 0.0
FL-Next: sp=DNA-directed RNA polymerase subunit beta 2; Pinus lambertiana (Sugar pine). Plastid; Chloroplast. 0.0
Blast2go: dna-directed rna polymerase iii subunit rpc2 0.0
Internal
uagpf_v2_unigene40482 uagpf v2.0 372
AutoFact: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RMJ9_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-binding protein 0.0
C-terminus
uagpf_v2_unigene40581 uagpf v2.0 339
AutoFact: ZEITLUPE n=1 Tax=Mesembryanthemum crystallinum RepID=Q6UEI5_MESCR 0.0
Blast2go: adagio protein 1 0.0
unknown
uagpf_v2_unigene40722 uagpf v2.0 327
AutoFact: homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana] ref|NP_849596.1| homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana] ref|NP_001184911.1| homeobox-leucine zipper protein HDG2 [Arabidopsis thaliana] sp|Q94C37.1|HDG2_ARATH RecName: Full=H 0.0
Blast2go: homeobox-leucine zipper protein hdg2 0.0
Putative coding
uagpf_v2_unigene40768 uagpf v2.0 241
AutoFact: C2-H2 zinc finger protein [Arabidopsis thaliana] 9.0e-11
Blast2go: c2-h2 zinc finger protein 1.00257e-14
unknown
uagpf_v2_unigene40782 uagpf v2.0 408
AutoFact: Tubby-like protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SPK2_PHYPA 0.0
Blast2go: tubby-like f-box protein 3 0.0
unknown
uagpf_v2_unigene40814 uagpf v2.0 352
AutoFact: TPA_inf: class IV HD-Zip protein HDZ43 [Physcomitrella patens] 0.0
FL-Next: tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: homeobox-leucine zipper protein meristem l1 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain