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Assembly Name: uagpf v2.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene49927 uagpf v2.0 491
AutoFact: putative transcription initiation factor [Oryza sativa Japonica Group] gb|ABB46979.1| mutant TFIIF-alpha, putative, expressed [Oryza sativa Japonica Group] 2.0e-32
FL-Next: Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74 0.0
Blast2go: transcription initiation factor iif subunit alpha 7.42688e-44
C-terminus
uagpf_v2_unigene49934 uagpf v2.0 582
AutoFact: TauD domain containing protein 4.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: clavaminate synthase-like protein 0.0
C-terminus
uagpf_v2_unigene49941 uagpf v2.0 380
AutoFact: Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SQ20_VITVI 0.0
FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin carboxyl-terminal hydrolase 24 0.0
Putative C-terminus
uagpf_v2_unigene49969 uagpf v2.0 520
AutoFact: aprataxin [Arabidopsis thaliana] sp|Q9M041.1|BH140_ARATH RecName: Full=Transcription factor bHLH140; AltName: Full=Basic helix-loop-helix protein 140; Short=AtbHLH140; Short=bHLH 140; AltName: Full=Transcription factor EN 122; AltName: Full=bHLH transcrip 5.0e-32
Blast2go: transcription factor bhlh140-like 2.10195e-43
Putative coding
uagpf_v2_unigene49979 uagpf v2.0 394
AutoFact: protein kinase-like protein [Arabidopsis thaliana] emb|CAB80112.1| protein kinase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
uagpf_v2_unigene50007 uagpf v2.0 418
AutoFact: Unassigned protein
Blast2go: unknown [Picea sitchensis] 0.0
unknown
uagpf_v2_unigene50015 uagpf v2.0 609
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_818.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TRX8_VITVI 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 2-like 0.0
Putative C-terminus
uagpf_v2_unigene50022 uagpf v2.0 391
AutoFact: Basic-leucine zipper transcription factor-like protein n=4 Tax=Arabidopsis RepID=B3H7M2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bzip transcription factor 0.0
Internal
uagpf_v2_unigene50069 uagpf v2.0 469
AutoFact: ubiquitin carboxyl-terminal hydrolase L5 [Arabidopsis thaliana] gb|AAB60914.1| ESTs gb|T45673,gb|N37512 come from this gene [Arabidopsis thaliana] gb|AAL38259.1| unknown protein [Arabidopsis thaliana] gb|AAM47868.1| unknown protein [Arabidopsis thaliana] 6.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ubiquitin carboxyl-terminal hydrolase isozyme l5-like 0.0
N-terminus
uagpf_v2_unigene50097 uagpf v2.0 360
AutoFact: Alba DNA/RNA-binding protein [Arabidopsis thaliana] gb|AAF88114.1|AC021043_7 Unknown protein [Arabidopsis thaliana] gb|AAK97729.1| At1g29250/F28N24_8 [Arabidopsis thaliana] gb|AAL31130.1| At1g29250/F28N24_8 [Arabidopsis thaliana] gb|AAM63005.1| unknown [A 3.00018e-42
Blast2go: nucleic acid binding protein 0.0
Putative coding
uagpf_v2_unigene50172 uagpf v2.0 465
AutoFact: Salt tolerance protein n=1 Tax=Brassica rapa RepID=A8IXV4_BRACM 3.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: salt tolerance protein 6.97923e-32
N-terminus
uagpf_v2_unigene50178 uagpf v2.0 522
AutoFact: Xenotropic and polytropic murine leukemia virus receptor ids-4, putative n=1 Tax=Ricinus communis RepID=B9SES9_RICCO 0.0
FL-Next: sp=SPX domain-containing protein 3; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: spx domain-containing protein 2 0.0
N-terminus
uagpf_v2_unigene50179 uagpf v2.0 187
AutoFact: putative methyltransferase PMT3 [Arabidopsis thaliana] ref|NP_001031639.1| putative methyltransferase PMT3 [Arabidopsis thaliana] sp|Q93YV7.1|PMT3_ARATH RecName: Full=Probable methyltransferase PMT3 gb|AAL24095.1| putative ankyrin protein [Arabidopsis tha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methyltransferase pmt3 0.0
Internal
uagpf_v2_unigene50191 uagpf v2.0 365
AutoFact: DEAD-box ATP-dependent RNA helicase 21 [Arabidopsis thaliana] sp|P93008.1|RH21_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 21 gb|AAC69128.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase [Arabidopsis thaliana] gb|AAL38370.1| put 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dead-box atp-dependent rna helicase 0.0
C-terminus
uagpf_v2_unigene50197 uagpf v2.0 467
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: clavaminate synthase-like protein 7.1931e-31
N-terminus
uagpf_v2_unigene50202 uagpf v2.0 355
AutoFact: AP2 domain-containing transcription factor (Fragment) n=2 Tax=Populus trichocarpa RepID=B9GM80_POPTR 0.0
FL-Next: tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Blast2go: ap2-like ethylene-responsive transcription factor bbm 0.0
Internal
uagpf_v2_unigene50219 uagpf v2.0 202
AutoFact: putative xyloglucan glycosyltransferase 5 [Arabidopsis thaliana] sp|Q9SB75.1|CSLC5_ARATH RecName: Full=Probable xyloglucan glycosyltransferase 5; AltName: Full=Cellulose synthase-like protein C5; Short=AtCslC5 emb|CAA19764.1| putative protein [Arabidopsis 0.0
FL-Next: tr=Cellulose synthase-like A2; Pinus taeda (Loblolly pine). 0.0
Blast2go: probable xyloglucan glycosyltransferase 5-like 0.0
Internal
uagpf_v2_unigene50279 uagpf v2.0 374
AutoFact: CDC27 domain containing protein 4.0e-06
FL-Next: sp=DNA-binding protein BIN4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-binding protein bin4 0.0
Internal
uagpf_v2_unigene50325 uagpf v2.0 467
AutoFact: YDG_SRA multi-domain protein 0.0
Blast2go: zinc finger 0.0
unknown
uagpf_v2_unigene50396 uagpf v2.0 288
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger swim domain-containing protein 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain