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Assembly Name: uagpf v2.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Blast2go

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene6391 uagpf v2.0 575
• AutoFact: AGO1-2 (Fragment) n=1 Tax=Nicotiana benthamiana RepID=Q2LFC3_NICBE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein argonaute 0.0
C-terminus
uagpf_v2_unigene6404 uagpf v2.0 918
• AutoFact: Transcription initiation factor IIB n=7 Tax=Poaceae RepID=TF2B_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transcription initiation factor iib 0.0
N-terminus
uagpf_v2_unigene6406 uagpf v2.0 682
• AutoFact: cullin 4 [Arabidopsis thaliana] 0.0
• FL-Next: sp=Cullin-4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: ubiquitin-protein cullin 4 0.0
N-terminus
uagpf_v2_unigene6447 uagpf v2.0 845
• AutoFact: protein kinase-like protein [Arabidopsis thaliana] emb|CAB80112.1| protein kinase-like protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene6452 uagpf v2.0 773
• AutoFact: Eukaryotic translation initiation factor 2 subunit 1 [Arabidopsis thaliana] gb|AAL86344.1| putative eukaryotic translation initiation factor 2 alpha subunit eIF2 [Arabidopsis thaliana] gb|AAD25664.2| putative eukaryotic translation initiation factor 2 alp 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: eukaryotic translation initiation factor 2 subunit alpha 0.0
N-terminus
uagpf_v2_unigene6455 uagpf v2.0 1714
• AutoFact: Ubiquitin carboxyl-terminal hydrolase isozyme L5, putative n=1 Tax=Ricinus communis RepID=B9S046_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ubiquitin carboxyl-terminal hydrolase l5 0.0
Complete
uagpf_v2_unigene6469 uagpf v2.0 2452
• AutoFact: myb family transcription factor [Brassica oleracea] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
uagpf_v2_unigene6473 uagpf v2.0 618
• AutoFact: YEATS family protein [Arabidopsis thaliana] dbj|BAB11199.1| unnamed protein product [Arabidopsis thaliana] gb|AAL59945.1| unknown protein [Arabidopsis thaliana] gb|AAM20126.1| unknown protein [Arabidopsis thaliana] gb|AAR28019.1| TAF14b [Arabidopsis thali 0.0
• FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
• Blast2go: protein af-9 homolog 0.0
N-terminus
uagpf_v2_unigene6477 uagpf v2.0 1020
• AutoFact: Histone H3 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U534_PHYPA 2.0e-24
• FL-Next: tr=Histone 3; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: cenh3 1.87561e-29
Putative Complete
uagpf_v2_unigene6480 uagpf v2.0 1554
• AutoFact: Octicosapeptide/Phox/Bem1p domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L8F8_ARALL 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: octicosapeptide phox bem1p domain-containing protein 8.15274e-32
N-terminus
uagpf_v2_unigene6499 uagpf v2.0 558
• AutoFact: RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana] dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana] gb|AAK96804.1| Unknown prot 7.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif family expressed 0.0
N-terminus
uagpf_v2_unigene6513 uagpf v2.0 710
• AutoFact: homeodomain-leucine zipper protein 56 [Glycine max] 8.00001e-41
• Blast2go: homeobox-leucine zipper protein athb-6-like 0.0
Coding
uagpf_v2_unigene6516 uagpf v2.0 616
• AutoFact: C2H2-type zinc finger-containing protein [Arabidopsis thaliana] gb|AAK76505.1| unknown protein [Arabidopsis thaliana] gb|AAD31578.2| expressed protein [Arabidopsis thaliana] gb|AAM14308.1| unknown protein [Arabidopsis thaliana] gb|AEC09323.1| C2H2-type zi 0.0
• Blast2go: protein 0.0
unknown
uagpf_v2_unigene6530 uagpf v2.0 739
• AutoFact: Homeobox protein, putative n=1 Tax=Ricinus communis RepID=B9R943_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: homeobox-leucine zipper protein hat5-like 0.0
C-terminus
uagpf_v2_unigene6535 uagpf v2.0 486
• AutoFact: Patellin-4 n=3 Tax=Arabidopsis RepID=PATL4_ARATH 9.0e-07
• Blast2go: patellin-5 isoform 1 2.39614e-11
Coding
uagpf_v2_unigene6540 uagpf v2.0 875
• AutoFact: Ubiquitin-like domain-containing CTD phosphatase (Fragment) n=1 Tax=Solanum nigrum RepID=F4YBD0_SOLNI 2.0e-17
• FL-Next: sp=Ubiquitin-like domain-containing CTD phosphatase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: ubiquitin-like domain-containing ctd phosphatase 3.67241e-20
N-terminus
uagpf_v2_unigene6547 uagpf v2.0 834
• AutoFact: Transcription Factor IIF, Rap30/Rap74, interaction [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene6548 uagpf v2.0 685
• AutoFact: Rab family protein 3.0e-13
• Blast2go: uncharacterized gtp-binding protein at5g64813 1.74073e-19
Putative coding
uagpf_v2_unigene6553 uagpf v2.0 1306
• AutoFact: Arf gtpase-activating protein, putative n=1 Tax=Ricinus communis RepID=B9SNV8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable adp-ribosylation factor gtpase-activating protein agd8-like 0.0
Putative Complete
uagpf_v2_unigene6554 uagpf v2.0 601
• AutoFact: actin-related protein 7 [Arabidopsis thaliana] sp|Q8L4Y5.1|ARP7_ARATH RecName: Full=Actin-related protein 7 gb|AAM53247.1|AF507915_1 actin-related protein 7 [Arabidopsis thaliana] gb|AAM20512.1| actin -like protein [Arabidopsis thaliana] tpg|DAA00028.1| T 0.0
• FL-Next: sp=Actin-related protein 7; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: actin related protein 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain