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Assembly Name: uagpf v2.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Blast2go

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene5949 uagpf v2.0 361
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: zinc ion binding protein 0.0
Internal
uagpf_v2_unigene5976 uagpf v2.0 623
AutoFact: putative DNA-binding protein [Arabidopsis thaliana] emb|CAB77810.1| putative DNA-binding protein [Arabidopsis thaliana] emb|CAD29664.1| homeodomain protein 14 [Arabidopsis thaliana] gb|ABH04479.1| At4g03250 [Arabidopsis thaliana] 5.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: homeobox-leucine zipper family protein 0.0
Internal
uagpf_v2_unigene5993 uagpf v2.0 370
AutoFact: DNA damage-binding protein 2 [Arabidopsis thaliana] sp|Q6NQ88.1|DDB2_ARATH RecName: Full=Protein DAMAGED DNA-BINDING 2; AltName: Full=UV-damaged DNA-binding protein 2 gb|AAQ65193.1| At5g58760 [Arabidopsis thaliana] dbj|BAD42887.1| putative protein [Arabid 0.0
Blast2go: protein damaged dna-binding 2 0.0
unknown
uagpf_v2_unigene5999 uagpf v2.0 607
AutoFact: Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7U6B4_VITVI 1.0e-32
Blast2go: ubiquitin carboxyl-terminal hydrolase 5-like 1.52096e-35
Putative coding
uagpf_v2_unigene6002 uagpf v2.0 758
AutoFact: splicing factor U2af small subunit A [Arabidopsis thaliana] sp|Q9S709.1|U2AFA_ARATH RecName: Full=Splicing factor U2af small subunit A; AltName: Full=U2 auxiliary factor 35 kDa subunit A; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor s 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: u2 snrnp auxiliary small 0.0
C-terminus
uagpf_v2_unigene6006 uagpf v2.0 1446
AutoFact: putative transcription factor [Oryza sativa Japonica Group] gb|ABF99747.1| acyl-CoA binding family protein, putative, expressed [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: acyl- binding protein 4 0.0
Internal
uagpf_v2_unigene6015 uagpf v2.0 510
AutoFact: Serine/threonine-protein phosphatase PP2A-3 catalytic subunit n=30 Tax=Embryophyta RepID=PP2A3_ORYSJ 0.0
FL-Next: sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein phosphatase 2a catalytic subunit 0.0
Putative N-terminus
uagpf_v2_unigene6042 uagpf v2.0 791
AutoFact: uncharacterized protein [Arabidopsis thaliana] gb|AAK55696.1|AF378893_1 AT5g02770/F9G14_80 [Arabidopsis thaliana] emb|CAB86031.1| putative protein [Arabidopsis thaliana] gb|AAK91488.1| AT5g02770/F9G14_80 [Arabidopsis thaliana] dbj|BAD95440.1| putative pro 4.0e-09
Blast2go: protein 2.05244e-12
unknown
uagpf_v2_unigene6055 uagpf v2.0 978
AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-07
FL-Next: sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: wd repeat-containing 0.0
C-terminus
uagpf_v2_unigene6082 uagpf v2.0 466
AutoFact: inositol phosphate kinase [Glycine max] 0.0
Blast2go: inositol phosphate kinase 0.0
unknown
uagpf_v2_unigene6087 uagpf v2.0 966
AutoFact: ribosomal protein S24/S35 [Arabidopsis thaliana] ref|NP_850608.1| ribosomal protein S24/S35 [Arabidopsis thaliana] gb|AAG40012.1|AF324661_1 AT3g18240 [Arabidopsis thaliana] gb|AAG41489.1|AF326907_1 unknown protein [Arabidopsis thaliana] gb|AAK15567.1|AF34 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: ribosomal protein s24 s35 0.0
C-terminus
uagpf_v2_unigene6151 uagpf v2.0 804
AutoFact: ssDNA-binding transcriptional regulator [Arabidopsis thaliana] gb|AAF43941.1|AC012188_18 Contains similarity to a hypothetical protein from Arabidopsis thaliana gb|AC002521.2. EST gb|AI995686 comes from this gene gb|AAG48815.1|AF332452_1 putative DNA-bind 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ssdna-binding transcriptional regulator 0.0
C-terminus
uagpf_v2_unigene6197 uagpf v2.0 498
AutoFact: Beta-amylase n=1 Tax=Populus trichocarpa RepID=B9HKX1_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene6216 uagpf v2.0 782
AutoFact: Phytochrome-associated serine/threonine protein phosphatase 3 n=13 Tax=Embryophyta RepID=FYPP3_ARATH 0.0
FL-Next: sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: phosphoprotein phosphatase 0.0
C-terminus
uagpf_v2_unigene6248 uagpf v2.0 1214
AutoFact: 26S proteasome subunit RPN5b n=1 Tax=Elaeis guineensis RepID=B3TM04_ELAGV 0.0
FL-Next: tr=26S proteasome subunit RPN5b; Elaeis guineensis var. tenera (Oil palm). 0.0
Blast2go: 26s proteasome non-atpase regulatory subunit 12-like 0.0
N-terminus
uagpf_v2_unigene6250 uagpf v2.0 1038
AutoFact: Maintenance of ploidy protein MOB1 (MPS1 binder 1) n=16 Tax=Embryophyta RepID=Q9FHI1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mps one binder kinase activator-like 1a 0.0
N-terminus
uagpf_v2_unigene6253 uagpf v2.0 580
AutoFact: Putative methyl-binding domain protein n=1 Tax=Cryptomeria japonica RepID=Q1XG62_CRYJA 1.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methyl-cpg-binding domain 10 3.65069e-35
N-terminus
uagpf_v2_unigene6288 uagpf v2.0 1469
AutoFact: Malate dehydrogenase n=10 Tax=Pinaceae RepID=A9NVT9_PICSI 0.0
FL-Next: sp=Malate dehydrogenase, cytoplasmic 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: malate dehydrogenase 0.0
Complete
uagpf_v2_unigene6334 uagpf v2.0 1143
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] dbj|BAB03019.1| unnamed protein product [Arabidopsis thaliana] gb|AAM67115.1| PHD-finger protein, putative [Arabidopsis thaliana] gb|ABD94083.1| At3g24010 [Arabidopsis thaliana] dbj|BAH30 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: phd-finger protein 0.0
Complete
uagpf_v2_unigene6369 uagpf v2.0 644
AutoFact: Proteasome subunit alpha type n=3 Tax=Picea sitchensis RepID=A9NK08_PICSI 0.0
FL-Next: sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: multicatalytic endopeptidase complex 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain