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Assembly Name: uagpf v2.0

Name: nucleus

Term: GO:0005634  Help

Source: GO from Blast2go

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene4785 uagpf v2.0 474
• AutoFact: Beta-amylase n=1 Tax=Picea sitchensis RepID=A9NVE4_PICSI 0.0
• FL-Next: sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene4819 uagpf v2.0 940
• AutoFact: putative AP2/EREBP transcription factor [Arabidopsis thaliana] 2.0e-16
• FL-Next: tr=DREB protein; Taxus cuspidata (Japanese yew). 0.0
• Blast2go: ap2 erf domain-containing transcription factor 8.11769e-19
N-terminus
uagpf_v2_unigene4825 uagpf v2.0 606
• AutoFact: [M] COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase 0.0
• FL-Next: Isoform 3 of UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Arabidopsis thaliana GN=At1g24793 0.0
• Blast2go: udp-3-o- 0.0
C-terminus
uagpf_v2_unigene4855 uagpf v2.0 476
• AutoFact: zinc finger (MYND type) family protein / F-box family protein [Arabidopsis thaliana] sp|Q9FYF9.1|FB76_ARATH RecName: Full=F-box protein At1g67340 gb|AAG00241.1|AC002130_6 F1N21.16 [Arabidopsis thaliana] gb|AAL14418.1| At1g67340/F1N21_16 [Arabidopsis thali 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: f-box protein at1g67340-like 0.0
Internal
uagpf_v2_unigene4879 uagpf v2.0 579
• AutoFact: DNA-binding protein (Fragment) n=1 Tax=Catharanthus roseus RepID=A1DR78_CATRO 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: hdzip i protein 0.0
Putative C-terminus
uagpf_v2_unigene4889 uagpf v2.0 517
• AutoFact: BTB/POZ domain-containing protein KCTD9, putative n=1 Tax=Ricinus communis RepID=B9SI86_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: potassium channel tetramerisation and pentapeptide repeat-containing protein 0.0
C-terminus
uagpf_v2_unigene4896 uagpf v2.0 487
• AutoFact: cyclin D protein [Physcomitrella patens] emb|CAD21955.1| cyclin D [Physcomitrella patens] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: cyclin d protein 0.0
C-terminus
uagpf_v2_unigene4903 uagpf v2.0 335
• AutoFact: putative poly(A) polymerase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: nuclear poly polymerase 0.0
Internal
uagpf_v2_unigene4912 uagpf v2.0 1622
• AutoFact: casein kinase 2, beta polypeptide [Arabidopsis thaliana] sp|O80507.1|CSK2E_ARATH RecName: Full=Putative casein kinase II subunit beta-4; Short=CK II beta-4 gb|AAC27470.1| putative casein kinase II beta subunit [Arabidopsis thaliana] gb|AAM65621.1| putativ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: casein kinase beta polypeptide 0.0
Complete
uagpf_v2_unigene4929 uagpf v2.0 645
• AutoFact: Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9R8V3_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: squamosa promoter-binding-like protein 14-like 0.0
Putative C-terminus
uagpf_v2_unigene4946 uagpf v2.0 624
• AutoFact: pfam07777, MFMR, G-box binding protein MFMR 0.0
• Blast2go: transcription factor hbp-1a 0.0
unknown
uagpf_v2_unigene4949 uagpf v2.0 583
• AutoFact: Sentrin/sumo-specific protease, putative n=1 Tax=Ricinus communis RepID=B9SH87_RICCO 4.0e-32
• Blast2go: cysteine-type peptidase 1.37486e-37
unknown
uagpf_v2_unigene5004 uagpf v2.0 827
• AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: 5 -3 exoribonuclease 3-like 0.0
C-terminus
uagpf_v2_unigene5030 uagpf v2.0 818
• AutoFact: MYB transcription factor MYB93 [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene5034 uagpf v2.0 725
• AutoFact: DNA polymerase delta p66 subunit-like n=2 Tax=Oryza sativa RepID=Q5QNL2_ORYSJ 4.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna polymerase delta subunit 0.0
C-terminus
uagpf_v2_unigene5130 uagpf v2.0 847
• AutoFact: DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AAK25914.1|AF360204_1 unknown protein [Arabidopsis thaliana] dbj|BAB02324.1| unnamed protein product [Arabidopsis thaliana] gb|AAK64110.1| unknown protein [Arabidopsis thaliana] gb|AEE754 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: dna-directed rna polymerase i subunit rpa49 0.0
N-terminus
uagpf_v2_unigene5139 uagpf v2.0 930
• AutoFact: histone deacetylase 5 [Arabidopsis thaliana] sp|Q8RX28.1|HDA5_ARATH RecName: Full=Histone deacetylase 5 gb|AAM13986.1| putative histone deacetylase [Arabidopsis thaliana] gb|AAM53342.1| histone deacetylase-like protein [Arabidopsis thaliana] gb|AAN15392.1 6.0e-32
• FL-Next: sp=Histone deacetylase 5; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: histone deacetylase 2.68041e-37
C-terminus
uagpf_v2_unigene5194 uagpf v2.0 375
• AutoFact: SEUSS transcriptional co-regulator [Arabidopsis thaliana] ref|NP_001117434.1| SEUSS transcriptional co-regulator [Arabidopsis thaliana] sp|Q8W234.1|SEUSS_ARATH RecName: Full=Transcriptional corepressor SEUSS gb|AAL57277.1| SEUSS transcriptional co-regulat 0.0
• Blast2go: transcriptional corepressor seuss-like 0.0
Putative coding
uagpf_v2_unigene5221 uagpf v2.0 450
• AutoFact: putative DNA-binding protein [Arabidopsis thaliana] emb|CAB77810.1| putative DNA-binding protein [Arabidopsis thaliana] emb|CAD29664.1| homeodomain protein 14 [Arabidopsis thaliana] gb|ABH04479.1| At4g03250 [Arabidopsis thaliana] 3.0e-33
• Blast2go: homeobox-leucine zipper family protein 0.0
unknown
uagpf_v2_unigene5232 uagpf v2.0 819
• AutoFact: pfam07808, RED_N, RED-like protein N-terminal region 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain