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Assembly Name: uagpf v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene2 uagpf v2.0 434
AutoFact: Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GWX1_POPTR 0.0
FL-Next: sp=F-box protein At3g54460; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: f-box protein at3g54460-like 0.0
Internal
uagpf_v2_unigene13 uagpf v2.0 599
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: unknown [Picea sitchensis] 0.0
N-terminus
uagpf_v2_unigene127 uagpf v2.0 305
AutoFact: ethylene-responsive transcription factor ERF113 [Arabidopsis thaliana] sp|Q9LYU3.1|EF113_ARATH RecName: Full=Ethylene-responsive transcription factor ERF113 emb|CAB86640.1| putative protein [Arabidopsis thaliana] gb|AAS47615.1| At5g13330 [Arabidopsis thal 7.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 1.29765e-24
Internal
uagpf_v2_unigene274 uagpf v2.0 131
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY10_PICAB 3.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: reverse transcriptase 1.73073e-14
Internal
uagpf_v2_unigene283 uagpf v2.0 488
AutoFact: replication protein A1 [Oryza sativa Indica Group] gb|EAY89034.1| hypothetical protein OsI_10518 [Oryza sativa Indica Group] 0.0
Blast2go: replication protein a 70 kda dna-binding subunit-like 0.0
Putative coding
uagpf_v2_unigene338 uagpf v2.0 684
AutoFact: putative elongation factor [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription elongation factor s- 0.0
N-terminus
uagpf_v2_unigene444 uagpf v2.0 819
AutoFact: PREDICTED: ripening-related bZIP protein-like isoform 2 [Vitis vinifera] ref|XP_002284785.1| PREDICTED: ripening-related bZIP protein-like isoform 1 [Vitis vinifera] emb|CAB85632.1| putative ripening-related bZIP protein [Vitis vinifera] 2.0e-38
FL-Next: sp=ABSCISIC ACID-INSENSITIVE 5-like protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna binding 0.0
N-terminus
uagpf_v2_unigene677 uagpf v2.0 485
AutoFact: Transcription factor viviparous 1 n=1 Tax=Picea abies RepID=Q9FVK1_PICAB 6.0e-35
FL-Next: tr=Transcription factor viviparous 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
Blast2go: af175576_1transcription factor viviparous 1 9.1965e-40
C-terminus
uagpf_v2_unigene811 uagpf v2.0 914
AutoFact: Transcription factor RF2a, putative n=1 Tax=Ricinus communis RepID=B9SU10_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor 21 0.0
C-terminus
uagpf_v2_unigene876 uagpf v2.0 397
AutoFact: GAGA-binding transcriptional activator BBR/BPC6-like n=1 Tax=Vitis vinifera RepID=B2Z458_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: basic pentacysteine 4 0.0
C-terminus
uagpf_v2_unigene886 uagpf v2.0 1153
AutoFact: PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] dbj|BAD95354.1| receptor like protein [Arabidopsis thaliana] gb|AEE84563.1| PHD finger and bromo-adjacent homology domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ebs-bah-phd domain-containing protein 0.0
Complete
uagpf_v2_unigene950 uagpf v2.0 398
AutoFact: Domains rearranged methyltransferase n=3 Tax=Nicotiana RepID=B1GYI2_NICSY 0.0
FL-Next: sp=DNA (cytosine-5)-methyltransferase DRM2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: domains rearranged methyltransferase 0.0
Putative C-terminus
uagpf_v2_unigene1052 uagpf v2.0 1062
AutoFact: Alba multi-domain protein 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Putative C-terminus
uagpf_v2_unigene1113 uagpf v2.0 413
AutoFact: DUF296 domain containing protein 3.0e-25
Blast2go: dna-binding protein escarola-like 7.31837e-29
Coding
uagpf_v2_unigene1219 uagpf v2.0 380
AutoFact: Histone H2A n=8 Tax=Picea sitchensis RepID=A9P2B3_PICSI 9.0e-26
Blast2go: histone h2a 1.93918e-30
unknown
uagpf_v2_unigene1246 uagpf v2.0 250
AutoFact: Putative methyl-binding domain protein n=1 Tax=Cryptomeria japonica RepID=Q1XG62_CRYJA 9.94922e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: methyl-binding domain protein 0.0
N-terminus
uagpf_v2_unigene1254 uagpf v2.0 664
AutoFact: DNA repair protein xp-E, putative n=1 Tax=Ricinus communis RepID=B9SKT9_RICCO 0.0
FL-Next: sp=DNA damage-binding protein 1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Blast2go: dna damage-binding protein 1a 0.0
C-terminus
uagpf_v2_unigene1352 uagpf v2.0 1132
AutoFact: putative phosphopantothenoylcysteine decarboxylase [Arabidopsis thaliana] sp|P94063.2|HAL3B_ARATH RecName: Full=Probable phosphopantothenoylcysteine decarboxylase; AltName: Full=Halotolerance protein Hal3b; Short=AtHal3b gb|AAB53106.1| HAL3B protein [Arab 0.0
FL-Next: sp=Probable phosphopantothenoylcysteine decarboxylase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: phosphopantothenoylcysteine decarboxylase 0.0
Putative Complete
uagpf_v2_unigene1363 uagpf v2.0 681
AutoFact: Inducer of CBF expression 1 (Fragment) n=1 Tax=Picea abies RepID=B2KZF3_PICAB 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor ice1 0.0
C-terminus
uagpf_v2_unigene1490 uagpf v2.0 943
AutoFact: 50S ribosomal protein L21 n=4 Tax=Andropogoneae RepID=B6TJJ8_MAIZE 4.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: 50s ribosomal protein l21 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain