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Assembly Name: uagpf v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene5845 uagpf v2.0 697
• AutoFact: ATP-binding cassette transporter, subfamily I, member 15, ABC component protein PpABCI15 (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RAW0_PHYPA 0.0
• FL-Next: sp=UPF0051 protein ABCI8, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: at4g04770 t4b21_16 0.0
N-terminus
uagpf_v2_unigene5935 uagpf v2.0 391
• AutoFact: ARID/BRIGHT DNA-binding domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7L9D8_ARALL 9.99995e-41
• Blast2go: arid bright dna-binding domain-containing protein 1.68156e-44
unknown
uagpf_v2_unigene5993 uagpf v2.0 370
• AutoFact: DNA damage-binding protein 2 [Arabidopsis thaliana] sp|Q6NQ88.1|DDB2_ARATH RecName: Full=Protein DAMAGED DNA-BINDING 2; AltName: Full=UV-damaged DNA-binding protein 2 gb|AAQ65193.1| At5g58760 [Arabidopsis thaliana] dbj|BAD42887.1| putative protein [Arabid 0.0
• Blast2go: protein damaged dna-binding 2 0.0
unknown
uagpf_v2_unigene6023 uagpf v2.0 962
• AutoFact: cleavage and polyadenylation specificity factor subunit 2 [Arabidopsis thaliana] sp|Q9LKF9.2|CPSF2_ARATH RecName: Full=Cleavage and polyadenylation specificity factor subunit 2; AltName: Full=Cleavage and polyadenylation specificity factor 100 kDa subunit 0.0
• FL-Next: sp=Cleavage and polyadenylation specificity factor subunit 2; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: cleavage and polyadenylation specificity factor 0.0
Internal
uagpf_v2_unigene6079 uagpf v2.0 518
• AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H8S6_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: helicase-like transcription factor 0.0
Internal
uagpf_v2_unigene6253 uagpf v2.0 580
• AutoFact: Putative methyl-binding domain protein n=1 Tax=Cryptomeria japonica RepID=Q1XG62_CRYJA 1.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: methyl-cpg-binding domain 10 3.65069e-35
N-terminus
uagpf_v2_unigene6344 uagpf v2.0 982
• AutoFact: yippee-like protein [Arabidopsis thaliana] gb|AAM62838.1| Yippee-like protein [Arabidopsis thaliana] gb|AAN71946.1| unknown protein [Arabidopsis thaliana] dbj|BAH20057.1| AT2G40110 [Arabidopsis thaliana] gb|AEC09780.1| yippee-like protein [Arabidopsis tha 7.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: fad nad binding 0.0
Complete
uagpf_v2_unigene6449 uagpf v2.0 842
• AutoFact: Caldesmon multi-domain protein 7.0e-08
• Blast2go: protein 0.0
Putative coding
uagpf_v2_unigene6469 uagpf v2.0 2452
• AutoFact: myb family transcription factor [Brassica oleracea] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
uagpf_v2_unigene6477 uagpf v2.0 1020
• AutoFact: Histone H3 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U534_PHYPA 2.0e-24
• FL-Next: tr=Histone 3; Picea abies (Norway spruce) (Picea excelsa). 0.0
• Blast2go: cenh3 1.87561e-29
Putative Complete
uagpf_v2_unigene6547 uagpf v2.0 834
• AutoFact: Transcription Factor IIF, Rap30/Rap74, interaction [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene6553 uagpf v2.0 1306
• AutoFact: Arf gtpase-activating protein, putative n=1 Tax=Ricinus communis RepID=B9SNV8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable adp-ribosylation factor gtpase-activating protein agd8-like 0.0
Putative Complete
uagpf_v2_unigene6567 uagpf v2.0 758
• AutoFact: Bot1p domain containing protein 9.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uncharacterized protein 0.0
C-terminus
uagpf_v2_unigene6596 uagpf v2.0 622
• AutoFact: Ebs-bah-phd domain-containing protein n=7 Tax=Magnoliophyta RepID=B9IAJ0_POPTR 0.0
• Blast2go: ebs-bah-phd domain-containing protein 0.0
unknown
uagpf_v2_unigene6633 uagpf v2.0 688
• AutoFact: high mobility group-box and ARID domain-binding domain-containing protein [Arabidopsis thaliana] sp|Q9MAT6.1|HMG15_ARATH RecName: Full=High mobility group B protein 15; AltName: Full=Nucleosome/chromatin assembly factor group D 15 gb|AAF40449.1|AC004809_7 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: high mobility group family 0.0
C-terminus
uagpf_v2_unigene6643 uagpf v2.0 1205
• AutoFact: GATA transcription factor, putative n=1 Tax=Ricinus communis RepID=B9RQG2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
uagpf_v2_unigene6679 uagpf v2.0 493
• AutoFact: Ethylene transcription factor n=2 Tax=Fagus sylvatica RepID=Q70AB2_FAGSY 6.0e-19
• Blast2go: ap2 domain containing protein 2.25605e-23
unknown
uagpf_v2_unigene6680 uagpf v2.0 1676
• AutoFact: ADP-ribosylation factor 3 n=21 Tax=Magnoliophyta RepID=ARF3_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: adp-ribosylation factor 3 0.0
Complete
uagpf_v2_unigene6690 uagpf v2.0 390
• AutoFact: Transcription repressor MYB4 n=6 Tax=Brassicaceae RepID=MYB4_ARATH 3.00018e-42
• FL-Next: tr=R2R3-MYB transcription factor MYB5; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: transcription factor myb4 0.0
N-terminus
uagpf_v2_unigene6699 uagpf v2.0 754
• AutoFact: Drought responsive element binding protein 2 n=3 Tax=Glycine max RepID=C5IU97_SOYBN 1.0e-30
• Blast2go: dehydration-responsive element binding protein 2 1.38465e-38
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain