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Assembly Name: uagpf v2.0

Name: DNA binding

Term: GO:0003677  Help

Source: GO from Blast2go

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene8998 uagpf v2.0 374
AutoFact: transcription factor TCP4 [Arabidopsis thaliana] ref|NP_850589.1| transcription factor TCP4 [Arabidopsis thaliana] ref|NP_001189896.1| transcription factor TCP4 [Arabidopsis thaliana] sp|Q8LPR5.1|TCP4_ARATH RecName: Full=Transcription factor TCP4; AltName 9.0e-34
Blast2go: transcription factor tcp4 4.49701e-39
unknown
uagpf_v2_unigene9087 uagpf v2.0 959
AutoFact: DNA polymerase delta catalytic subunit n=6 Tax=Poaceae RepID=DPOD1_ORYSJ 0.0
FL-Next: sp=DNA polymerase delta catalytic subunit; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: dna polymerase delta subunit 1 0.0
Internal
uagpf_v2_unigene9092 uagpf v2.0 372
AutoFact: SEUSS transcriptional co-regulator [Arabidopsis thaliana] ref|NP_001117434.1| SEUSS transcriptional co-regulator [Arabidopsis thaliana] sp|Q8W234.1|SEUSS_ARATH RecName: Full=Transcriptional corepressor SEUSS gb|AAL57277.1| SEUSS transcriptional co-regulat 0.0
Blast2go: seuss transcriptional co-regulator 0.0
Coding
uagpf_v2_unigene9098 uagpf v2.0 417
AutoFact: transcription factor, putative 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: two-component response regulator arr 0.0
N-terminus
uagpf_v2_unigene9102 uagpf v2.0 1013
AutoFact: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic n=3 Tax=core eudicotyledons RepID=CLPAB_SOLLC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chaperone protein chloroplastic-like 0.0
C-terminus
uagpf_v2_unigene9107 uagpf v2.0 539
AutoFact: MYB transcription factor [Triticum aestivum] 0.0
Blast2go: myb transcription factor 0.0
Coding
uagpf_v2_unigene9117 uagpf v2.0 656
AutoFact: Dof domain zinc finger DNA-binding protein n=1 Tax=Picea abies RepID=Q14DX9_PICAB 0.0
Blast2go: dof zinc finger 0.0
unknown
uagpf_v2_unigene9293 uagpf v2.0 569
AutoFact: Zinc finger-homeodomain protein 2 n=1 Tax=Saruma henryi RepID=B0LK13_SARHE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zf-hd homeobox protein at4g24660-like 0.0
C-terminus
uagpf_v2_unigene9425 uagpf v2.0 867
AutoFact: putative mitotic arrest defective protein 2B [Oryza sativa Japonica Group] gb|EEE55135.1| hypothetical protein OsJ_02922 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: mitotic spindle assembly checkpoint protein mad2b 0.0
Complete
uagpf_v2_unigene9441 uagpf v2.0 524
AutoFact: DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] gb|AAK25914.1|AF360204_1 unknown protein [Arabidopsis thaliana] dbj|BAB02324.1| unnamed protein product [Arabidopsis thaliana] gb|AAK64110.1| unknown protein [Arabidopsis thaliana] gb|AEE754 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-directed rna polymerase i subunit rpa49 0.0
Internal
uagpf_v2_unigene9503 uagpf v2.0 243
AutoFact: histone-lysine N-methyltransferase CLF [Arabidopsis thaliana] sp|P93831.2|CLF_ARATH RecName: Full=Histone-lysine N-methyltransferase CLF; AltName: Full=Polycomb group protein CURLY LEAF; AltName: Full=Protein INCURVATA 1; AltName: Full=Protein SET DOMAIN 0.0
FL-Next: sp=Histone-lysine N-methyltransferase CLF; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: polycomb protein ez1 0.0
Internal
uagpf_v2_unigene9587 uagpf v2.0 595
AutoFact: DNA polymerase n=1 Tax=Ricinus communis RepID=B9SC90_RICCO 0.0
FL-Next: sp=DNA polymerase alpha catalytic subunit; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna polymerase alpha catalytic 0.0
C-terminus
uagpf_v2_unigene9704 uagpf v2.0 389
AutoFact: pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: at5g37260-like protein 5.91824e-41
N-terminus
uagpf_v2_unigene9725 uagpf v2.0 797
AutoFact: abscisic acid responsive element-binding protein 2 [Populus suaveolens] 9.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna binding 0.0
Putative C-terminus
uagpf_v2_unigene9817 uagpf v2.0 743
AutoFact: SEUSS transcriptional co-regulator [Arabidopsis thaliana] ref|NP_001117434.1| SEUSS transcriptional co-regulator [Arabidopsis thaliana] sp|Q8W234.1|SEUSS_ARATH RecName: Full=Transcriptional corepressor SEUSS gb|AAL57277.1| SEUSS transcriptional co-regulat 0.0
FL-Next: tr=SEU3A protein; Antirrhinum majus (Garden snapdragon). 0.0
Blast2go: transcriptional corepressor seuss-like 0.0
Putative C-terminus
uagpf_v2_unigene9901 uagpf v2.0 505
AutoFact: Protein phosphatase 2a, regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9SH46_RICCO 0.0
FL-Next: sp=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus
uagpf_v2_unigene9915 uagpf v2.0 627
AutoFact: cell growth defect factor-like [Solanum tuberosum] 5.0e-24
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized protein 0.0
N-terminus
uagpf_v2_unigene10107 uagpf v2.0 628
AutoFact: Dof domain zinc finger DNA-binding protein n=1 Tax=Picea abies RepID=Q14DX9_PICAB 1.0e-17
Blast2go: cycling dof factor-like 1 7.57139e-19
unknown
uagpf_v2_unigene10165 uagpf v2.0 264
AutoFact: pfam00665, rve, Integrase core domain 5.0e-12
FL-Next: tr=Gag-pol polyprotein, putative; Asparagus officinalis (Garden asparagus). 0.0
Blast2go: gag-pol polyprotein 0.0
C-terminus
uagpf_v2_unigene10389 uagpf v2.0 1152
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna polymerase iv second largest subunit 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain