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Assembly Name: uagpf v2.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Blast2go

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
uagpf_v2_unigene17268 uagpf v2.0 963
AutoFact: splicing factor 3B subunit 5 [Arabidopsis thaliana] sp|P58728.1|SF3BB_ARATH RecName: Full=Uncharacterized protein At4g14342 gb|AAL36377.1| unknown protein [Arabidopsis thaliana] gb|AAM67534.1| unknown protein [Arabidopsis thaliana] dbj|BAC43291.1| unknown 8.99634e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 5 0.0
Complete
uagpf_v2_unigene18902 uagpf v2.0 433
AutoFact: splicing factor 3B subunit 5 [Arabidopsis thaliana] sp|P58728.1|SF3BB_ARATH RecName: Full=Uncharacterized protein At4g14342 gb|AAL36377.1| unknown protein [Arabidopsis thaliana] gb|AAM67534.1| unknown protein [Arabidopsis thaliana] dbj|BAC43291.1| unknown 8.99634e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: splicing factor 3b subunit 5 0.0
Putative Complete
uagpf_v2_unigene25051 uagpf v2.0 448
AutoFact: Nuclear pre-mRNA splicing factor, component of splicing factor 3b (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8JHC1_CHLRE 0.0
Blast2go: splicing factor 3b subunit 0.0
unknown
uagpf_v2_unigene25757 uagpf v2.0 652
AutoFact: Lariat debranching enzyme [Arabidopsis thaliana] sp|Q94K01.1|DBR1_ARATH RecName: Full=Lariat debranching enzyme; Short=AtDBR1 gb|AAK43876.1|AF370499_1 RNA lariat debranching enzyme - like protein [Arabidopsis thaliana] gb|ABI54338.1| At4g31770 [Arabidopsi 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lariat debranching enzyme 0.0
N-terminus
uagpf_v2_unigene26064 uagpf v2.0 381
AutoFact: CLP-like protein 3 [Arabidopsis thaliana] ref|NP_974220.1| CLP-like protein 3 [Arabidopsis thaliana] gb|AAF04897.1|AC011437_12 unknown protein [Arabidopsis thaliana] gb|AAL32944.1| Unknown protein [Arabidopsis thaliana] gb|AAM91151.1| unknown protein [Ara 0.0
Blast2go: protein clp1 homolog 0.0
unknown
uagpf_v2_unigene27457 uagpf v2.0 515
AutoFact: cell cycle control crn (crooked neck) protein-like [Arabidopsis thaliana] 0.0
Blast2go: pre-mrna-splicing factor clf1 0.0
unknown
uagpf_v2_unigene28048 uagpf v2.0 1571
AutoFact: [R] COG2319 FOG: WD40 repeat 0.0
FL-Next: sp=Flowering time control protein FY; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: flowering time control protein fy 0.0
C-terminus
uagpf_v2_unigene28062 uagpf v2.0 735
AutoFact: Ferrochelatase n=1 Tax=Nicotiana tabacum RepID=Q949G2_TOBAC 0.0
FL-Next: sp=Ferrochelatase-2, chloroplastic; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: ferrochelatase- chloroplastic-like 0.0
C-terminus
uagpf_v2_unigene28410 uagpf v2.0 476
AutoFact: PREDICTED: similar to splicing factor, putative n=1 Tax=Vitis vinifera RepID=UPI0001983CB2 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: splicing factor 3b subunit 1-like 0.0
Internal
uagpf_v2_unigene28783 uagpf v2.0 508
AutoFact: Unassigned protein
Blast2go: protein rrp5 homolog 0.0
unknown
uagpf_v2_unigene29228 uagpf v2.0 336
AutoFact: putative receptor-like protein kinase [Arabidopsis thaliana] 4.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: lrr receptor-like serine threonine-protein kinase fei 0.0
Putative C-terminus
uagpf_v2_unigene29436 uagpf v2.0 630
AutoFact: PREDICTED: similar to splicing factor, putative n=1 Tax=Vitis vinifera RepID=UPI0001983CB2 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: splicing factor 3b subunit 1-like 0.0
Internal
uagpf_v2_unigene30597 uagpf v2.0 372
AutoFact: WS01017.B21.1_P02 SS-R-N-A-11 Picea sitchensis cDNA clone WS01017_P02 3', mRNA sequence. 0.0
FL-Next: tr=Os03g0270200 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: protein 2.90775e-27
N-terminus
uagpf_v2_unigene31932 uagpf v2.0 601
AutoFact: PREDICTED: similar to splicing factor, putative n=1 Tax=Vitis vinifera RepID=UPI0001983CB2 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: splicing factor 3b subunit 1-like 0.0
Complete
uagpf_v2_unigene32036 uagpf v2.0 614
AutoFact: [A] COG5182 Splicing factor 3b, subunit 2 0.0
Blast2go: splicing factor 3b subunit 2 0.0
unknown
uagpf_v2_unigene35480 uagpf v2.0 118
AutoFact: cell cycle control crn (crooked neck) protein-like [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: pre-mrna-splicing factor clf1 0.0
Internal
uagpf_v2_unigene35666 uagpf v2.0 228
AutoFact: [A] COG5182 Splicing factor 3b, subunit 2 0.0
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Blast2go: splicing factor 3b subunit 2 0.0
Internal
uagpf_v2_unigene36585 uagpf v2.0 359
AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein kinase 0.0
N-terminus
uagpf_v2_unigene37081 uagpf v2.0 480
AutoFact: putative RNA-binding region RNP-1 and Splicing factor PWI family member protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-binding protein 0.0
N-terminus
uagpf_v2_unigene37649 uagpf v2.0 408
AutoFact: PK12 protein kinase [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain