Sustainpine_db
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Assembly Name: uagpf v2.0

Name: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).

Source: Description from FL-Next

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
uagpf_v2_unigene420 uagpf v2.0 435
• AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: gag-pol polyprotein 0.0
Internal
uagpf_v2_unigene4547 uagpf v2.0 838
• AutoFact: NXRV075_D04_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV075_D04 5' similar to Arabidopsis thaliana sequence At1g37110 see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence. 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: hypothetical protein VITISV_011062 [Vitis vinifera] 0.0
Putative N-terminus
uagpf_v2_unigene4940 uagpf v2.0 1062
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QXM6_ORYSJ 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: retrotransposon unclassified 0.0
C-terminus
uagpf_v2_unigene6538 uagpf v2.0 632
• AutoFact: NXRV092_H05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV092_H05 5' similar to Arabidopsis thaliana sequence At2g13930 putative retroelement pol polyprotein see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence. 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: hypothetical protein VITISV_004415 [Vitis vinifera] 0.0
Internal
uagpf_v2_unigene7487 uagpf v2.0 398
• AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 2.0e-31
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: reverse transcriptase 1.56398e-40
Internal
uagpf_v2_unigene9589 uagpf v2.0 411
• AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 1.0e-22
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: gag-pol polyprotein 3.60639e-26
C-terminus
uagpf_v2_unigene11808 uagpf v2.0 1797
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: gag-pol polyprotein 0.0
C-terminus
uagpf_v2_unigene20360 uagpf v2.0 596
• AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: gag-pol polyprotein 0.0
Putative N-terminus
uagpf_v2_unigene20393 uagpf v2.0 1097
• AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 9.0e-21
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: gag-pol polyprotein 3.50465e-23
C-terminus
uagpf_v2_unigene20395 uagpf v2.0 984
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: gag-pol polyprotein 0.0
C-terminus
uagpf_v2_unigene20407 uagpf v2.0 1233
• AutoFact: Gag-Pol polyprotein n=1 Tax=Lotus japonicus RepID=B8YLY7_LOTJA 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: gag-pol polyprotein 0.0
N-terminus
uagpf_v2_unigene20409 uagpf v2.0 1150
• AutoFact: Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL 1.4013e-45
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: gag-pol polyprotein 0.0
Internal
uagpf_v2_unigene32335 uagpf v2.0 459
• AutoFact: Unassigned protein
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: hypothetical protein VITISV_042009 [Vitis vinifera] 0.0
Putative C-terminus
uagpf_v2_unigene34187 uagpf v2.0 449
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Picea abies RepID=Q9FY11_PICAB 4.0e-25
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: reverse transcriptase 2.45181e-32
Internal
uagpf_v2_unigene35522 uagpf v2.0 413
• AutoFact: RVT_2 domain containing protein 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: hypothetical retrotransposon 0.0
Internal
uagpf_v2_unigene35988 uagpf v2.0 376
• AutoFact: PREDICTED: similar to pol polyprotein, partial n=1 Tax=Nasonia vitripennis RepID=UPI00015B4525 2.0e-23
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: lectin receptor kinase 2.79972e-26
Internal
uagpf_v2_unigene38204 uagpf v2.0 461
• AutoFact: NV19190; similar to pol polyprotein 6.0e-14
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: hypothetical protein VITISV_040966 [Vitis vinifera] 4.34763e-40
Putative N-terminus
uagpf_v2_unigene40173 uagpf v2.0 260
• AutoFact: Putative pol polyprotein n=1 Tax=Brassica oleracea var. botrytis RepID=A2T1U5_BRAOB 0.0
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: retrotransposon unclassified 0.0
Internal
uagpf_v2_unigene40706 uagpf v2.0 356
• AutoFact: Putaive copia-like retrotransposon polyprotein, 5'-partial (Fragment) n=2 Tax=Oryza sativa RepID=Q8W5D1_ORYSA 2.0e-10
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: retrotransposon ty1-copia subclass 1.64456e-12
Internal
uagpf_v2_unigene41671 uagpf v2.0 264
• AutoFact: Unassigned protein
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Blast2go: hypothetical protein VITISV_032634 [Vitis vinifera] 5.42963e-13
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain