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Assembly Name: biogeco2 v2.0

Name: Rhamnogalacturonate lyase

Term: IPR010325  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene181 biogeco2 v2.0 758
AutoFact: O-FucT domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
Putative C-terminus
biog2_v2.0_unigene625 biogeco2 v2.0 472
AutoFact: O-fucosyltransferase-like protein [Arabidopsis thaliana] gb|AAK25969.1|AF360259_1 putative axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gb|AAN71964.1| putative axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gb|AEC09474.1| O-fuc 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
unknown
biog2_v2.0_unigene1622 biogeco2 v2.0 560
AutoFact: rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gb|AEE28513.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene9181 biogeco2 v2.0 569
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] dbj|BAB02197.1| unnamed protein product [Arabidopsis thaliana] dbj|BAE98825.1| hypothetical protein [Arabidopsis thaliana] gb|AEE77150.1| O-fucosyltransferase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
C-terminus
biog2_v2.0_unigene9228 biogeco2 v2.0 445
AutoFact: O-FucT domain containing protein 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
unknown
biog2_v2.0_unigene11092 biogeco2 v2.0 655
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] gb|AAQ89634.1| At1g14020 [Arabidopsis thaliana] dbj|BAF01665.1| growth regulator like protein [Arabidopsis thaliana] dbj|BAF01818.1| growth regulator like protein [Arabidopsis thaliana] gb|AEE2909 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
Internal
biog2_v2.0_unigene12300 biogeco2 v2.0 370
AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Internal
biog2_v2.0_unigene13630 biogeco2 v2.0 102
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] gb|AAC67324.1| similar to axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gb|AAM13108.1| similar to axi 1 protein [Arabidopsis thaliana] gb|AAM91218.1| similar to axi 1 protein [Arabid 0.0
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
Internal
biog2_v2.0_unigene14579 biogeco2 v2.0 410
AutoFact: O-FucT domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
Internal
biog2_v2.0_unigene17232 biogeco2 v2.0 777
AutoFact: O-fucosyltransferase family protein [Arabidopsis thaliana] gb|AAC67324.1| similar to axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gb|AAM13108.1| similar to axi 1 protein [Arabidopsis thaliana] gb|AAM91218.1| similar to axi 1 protein [Arabid 0.0
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
Putative N-terminus
biog2_v2.0_unigene17878 biogeco2 v2.0 533
AutoFact: Gag and Pol n=1 Tax=Zea mays RepID=Q8LSK0_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon unclassified 0.0
Internal
biog2_v2.0_unigene18206 biogeco2 v2.0 129
AutoFact: O-FucT domain containing protein 0.0
Blast2go: duf246 domain-containing protein at1g04910-like 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain