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Assembly Name: biogeco2 v2.0

Name: Zinc finger, C3HC4 RING-type

Term: IPR018957  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog2_v2.0_unigene7881 biogeco2 v2.0 681
AutoFact: Ankyrin-repeat containing protein, putative n=1 Tax=Ricinus communis RepID=B9RG78_RICCO 0.0
FL-Next: sp=E3 ubiquitin-protein ligase KEG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: at5g13530-like protein 0.0
Internal
biog2_v2.0_unigene7893 biogeco2 v2.0 493
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001078409.1| RING/U-box domain-containing protein [Arabidopsis thaliana] emb|CAA19684.1| putative protein [Arabidopsis thaliana] emb|CAB78969.1| putative protein [Arabidopsis thaliana] gb| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene7896 biogeco2 v2.0 404
AutoFact: Zinc finger family-like protein (Fragment) n=4 Tax=Picea sitchensis RepID=E0ZH37_PICSI 2.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger family-like protein 0.0
C-terminus
biog2_v2.0_unigene7910 biogeco2 v2.0 617
AutoFact: RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana] gb|AAO42065.1| unknown protein [Arabidopsis thaliana] gb|AAO50515.1| unknown protein [Arabidopsis thaliana] gb|AEC07265.1| RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thalia 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ring fyve phd zinc finger-containing protein 0.0
N-terminus
biog2_v2.0_unigene8027 biogeco2 v2.0 471
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKI3_RICCO 0.0
FL-Next: tr=Os05g0119600 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: sister chromatid cohesion protein dcc1-like 0.0
C-terminus
biog2_v2.0_unigene8188 biogeco2 v2.0 494
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] gb|AAR92268.1| At1g47570 [Arabidopsis thaliana] gb|AAS99681.1| At1g47570 [Arabidopsis thaliana] gb|AEE32187.1| RING/U-box domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: ring u-box domain-containing protein 0.0
Putative Complete
biog2_v2.0_unigene8197 biogeco2 v2.0 694
AutoFact: Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9T0P5_RICCO 3.00018e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger 0.0
Putative C-terminus
biog2_v2.0_unigene8285 biogeco2 v2.0 609
AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9SNU8_RICCO 8.0e-35
Blast2go: ring finger 0.0
Putative coding
biog2_v2.0_unigene8297 biogeco2 v2.0 409
AutoFact: E3 ubiquitin-protein ligase CIP8 [Arabidopsis thaliana] sp|Q9SPL2.1|CIP8_ARATH RecName: Full=E3 ubiquitin-protein ligase CIP8; AltName: Full=COP1-interacting protein 8 gb|AAD56636.1|AF162150_1 COP1-interacting protein CIP8 [Arabidopsis thaliana] dbj|BAA97 5.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
biog2_v2.0_unigene8334 biogeco2 v2.0 410
AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein spa1-related 3-like 0.0
C-terminus
biog2_v2.0_unigene8367 biogeco2 v2.0 509
AutoFact: Zinc finger, C3HC4 type family protein n=3 Tax=Andropogoneae RepID=B6SSJ0_MAIZE 1.0e-15
Blast2go: protein 7.79632e-16
unknown
biog2_v2.0_unigene8402 biogeco2 v2.0 481
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RRE2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ankyrin-like protein 0.0
C-terminus
biog2_v2.0_unigene8405 biogeco2 v2.0 669
AutoFact: Zinc finger, C3HC4 type family protein n=3 Tax=Andropogoneae RepID=B6SSJ0_MAIZE 1.0e-32
Blast2go: zinc c3hc4 type family protein 2.6244e-35
unknown
biog2_v2.0_unigene8414 biogeco2 v2.0 421
AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001078409.1| RING/U-box domain-containing protein [Arabidopsis thaliana] emb|CAA19684.1| putative protein [Arabidopsis thaliana] emb|CAB78969.1| putative protein [Arabidopsis thaliana] gb| 7.00649e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog2_v2.0_unigene8417 biogeco2 v2.0 554
AutoFact: RING-H2 finger protein RHG1a-like n=1 Tax=Oryza sativa Japonica Group RepID=Q5N7R4_ORYSJ 0.0
Blast2go: protein binding protein 0.0
Putative coding
biog2_v2.0_unigene8445 biogeco2 v2.0 517
AutoFact: protein phosphatase 2C (PP2C) [Fagus sylvatica] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein phosphatase 0.0
Internal
biog2_v2.0_unigene8462 biogeco2 v2.0 479
AutoFact: putative ring-box Roc1/Rbx1/Hrt1 protein [Olimarabidopsis pumila] 0.0
FL-Next: tr=Ring box protein; Populus tomentosa (Chinese white poplar). 0.0
Blast2go: ring-box protein 0.0
Complete
biog2_v2.0_unigene8464 biogeco2 v2.0 366
AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9R796_RICCO 0.0
Blast2go: protein binding 0.0
Coding
biog2_v2.0_unigene8487 biogeco2 v2.0 341
AutoFact: copine-like protein [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: e3 ubiquitin-protein ligase rglg2 0.0
Internal
biog2_v2.0_unigene8496 biogeco2 v2.0 310
AutoFact: ubiquitination-promoting complex protein 1 [Arabidopsis thaliana] sp|Q9SIZ8.2|RKP_ARATH RecName: Full=E3 ubiquitin-protein ligase RKP; Short=AtKPC1; AltName: Full=Protein RELATED TO KPC1 gb|AEC07251.1| ubiquitination-promoting complex protein 1 [Arabidops 0.0
FL-Next: sp=E3 ubiquitin-protein ligase RKP; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain