Sustainpine_db
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Assembly Name: biogeco2 v2.0

Name: nucleic acid binding

Term: GO:0003676  Help

Source: GO from Blast2go

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog2_v2.0_unigene69 biogeco2 v2.0 1010
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
Complete
biog2_v2.0_unigene142 biogeco2 v2.0 1470
• AutoFact: splicing factor 3B subunit 3 [Arabidopsis thaliana] ref|NP_567016.1| putative splicing factor [Arabidopsis thaliana] emb|CAB75754.1| spliceosomal-like protein [Arabidopsis thaliana] emb|CAB75756.1| spliceosomal-like protein [Arabidopsis thaliana] gb|AEE79 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Complete
biog2_v2.0_unigene167 biogeco2 v2.0 1381
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAC42069.1| unknown protein [Arabidopsis thaliana] gb|AEE75401.1| RNA recognition motif-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif-containing protein 0.0
Putative Complete
biog2_v2.0_unigene200 biogeco2 v2.0 675
• AutoFact: exonuclease family protein [Arabidopsis thaliana] dbj|BAB11450.1| exonuclease-like protein [Arabidopsis thaliana] gb|AED91196.1| exonuclease family protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: exonuclease family protein 0.0
N-terminus
biog2_v2.0_unigene209 biogeco2 v2.0 719
• AutoFact: HNH endonuclease [Arabidopsis thaliana] emb|CAB61975.1| hypothetical protein [Arabidopsis thaliana] gb|ABK32201.1| At3g47490 [Arabidopsis thaliana] gb|AEE78288.1| HNH endonuclease [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: hnh endonuclease 0.0
Putative Complete
biog2_v2.0_unigene239 biogeco2 v2.0 544
• AutoFact: RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] gb|AEE75227.1| RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: polyadenylate-binding protein 2-a 0.0
C-terminus
biog2_v2.0_unigene279 biogeco2 v2.0 513
• AutoFact: regulator of telomere elongation helicase 1 rtel1 [Aedes aegypti] gb|EAT38683.1| regulator of telomere elongation helicase 1 rtel1 [Aedes aegypti] 4.0e-28
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: protein 0.0
C-terminus
biog2_v2.0_unigene288 biogeco2 v2.0 417
• AutoFact: putative small nuclear ribonucleoprotein D1 [Brassica napus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: small nuclear ribonucleoprotein sm d1 0.0
Putative Complete
biog2_v2.0_unigene400 biogeco2 v2.0 783
• AutoFact: splicing factor 3A subunit 3 [Arabidopsis thaliana] dbj|BAB09681.1| splicing factor 3a [Arabidopsis thaliana] gb|AAK64048.1| putative splicing factor 3a [Arabidopsis thaliana] gb|AAM44910.1| putative splicing factor 3a protein [Arabidopsis thaliana] gb|AE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: splicing factor 3a subunit 3-like 0.0
N-terminus
biog2_v2.0_unigene402 biogeco2 v2.0 592
• AutoFact: heterogeneous nuclear ribonucleoprotein R [Gallus gallus] ref|XP_003212536.1| PREDICTED: heterogeneous nuclear ribonucleoprotein R-like [Meleagris gallopavo] 4.0e-19
• FL-Next: tr=Os12g0577100 protein; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein r 0.0
Internal
biog2_v2.0_unigene656 biogeco2 v2.0 429
• AutoFact: SRI domain containing protein 2.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 0.0
Internal
biog2_v2.0_unigene728 biogeco2 v2.0 678
• AutoFact: zinc finger CCCH domain-containing protein 20 [Arabidopsis thaliana] sp|O82199.1|C3H20_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 20; Short=AtC3H20 gb|AAC62135.1| putative CCCH-type zinc finger protein [Arabidopsis thaliana] gb|AAM6084 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ccch-type zinc finger protein 0.0
C-terminus
biog2_v2.0_unigene729 biogeco2 v2.0 1369
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein q 0.0
Putative C-terminus
biog2_v2.0_unigene821 biogeco2 v2.0 450
• AutoFact: RNA exonuclease, putative n=1 Tax=Ricinus communis RepID=B9RXA0_RICCO 0.0
• Blast2go: exonuclease-like protein 0.0
unknown
biog2_v2.0_unigene930 biogeco2 v2.0 452
• AutoFact: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [Arabidopsis thaliana] emb|CAB82945.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAM53340.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb|AAQ56774 0.0
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: protein 0.0
Internal
biog2_v2.0_unigene934 biogeco2 v2.0 479
• AutoFact: SAP domain-containing protein [Arabidopsis thaliana] gb|AAT41750.1| At5g63460 [Arabidopsis thaliana] dbj|BAD44475.1| unknown protein [Arabidopsis thaliana] dbj|BAD44602.1| unknown protein [Arabidopsis thaliana] gb|AAU84684.1| At5g63460 [Arabidopsis thalia 4.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: sap domain-containing protein 2.83062e-43
Putative N-terminus
biog2_v2.0_unigene979 biogeco2 v2.0 403
• AutoFact: multiple RNA-binding domain-containing protein 1 [Lodderomyces elongisporus NRRL YB-4239] gb|EDK44746.1| multiple RNA-binding domain-containing protein 1 [Lodderomyces elongisporus NRRL YB-4239] 5.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: probable rna-binding protein 19-like 4.2039e-45
Putative N-terminus
biog2_v2.0_unigene1062 biogeco2 v2.0 382
• AutoFact: ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana] sp|Q9FT73.1|RQL2_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 2; AltName: Full=RecQ-like protein 2; Short=AtRecQ2; Short=AtRecQl2 emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana] gb|AE 3.99931e-42
• FL-Next: sp=ATP-dependent DNA helicase Q-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: atp-dependent dna helicase q-like 2-like 0.0
Internal
biog2_v2.0_unigene1116 biogeco2 v2.0 767
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein q 0.0
Coding
biog2_v2.0_unigene1149 biogeco2 v2.0 457
• AutoFact: Ank_2 domain containing protein 5.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: zinc finger ccch domain-containing protein 30-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain