Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: transmembrane protein

Source: Description from Blast2go


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene1344 biogeco3 v1.0 392
AutoFact: UPF0016 protein 5 [Arabidopsis thaliana] sp|Q9SX28.1|GDT15_ARATH RecName: Full=GDT1-like protein 5 gb|AAD49978.1|AC008075_11 Is a member of PF|01169 Uncharacterized (transmembrane domain) protein family [Arabidopsis thaliana] dbj|BAC43336.1| putative tran 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transmembrane protein 0.0
Internal
biog3_v1.0_unigene7386 biogeco3 v1.0 346
AutoFact: WS02836.CR_K07 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02836_K07 3', mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: transmembrane protein 0.0
Internal
biog3_v1.0_unigene7417 biogeco3 v1.0 223
AutoFact: WS02836.CR_K07 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02836_K07 3', mRNA sequence. 0.0
Blast2go: transmembrane protein 0.0
unknown
biog3_v1.0_unigene7805 biogeco3 v1.0 285
AutoFact: Rab5-interacting family protein [Arabidopsis thaliana] gb|AAK32862.1|AF361850_1 AT5g49540/K6M13_9 [Arabidopsis thaliana] gb|AAM91062.1| AT5g49540/K6M13_9 [Arabidopsis thaliana] gb|AED95827.1| Rab5-interacting family protein [Arabidopsis thaliana] 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transmembrane protein 0.0
Putative N-terminus
biog3_v1.0_unigene8661 biogeco3 v1.0 319
AutoFact: Rab5-interacting family protein [Arabidopsis thaliana] gb|AAK32862.1|AF361850_1 AT5g49540/K6M13_9 [Arabidopsis thaliana] gb|AAM91062.1| AT5g49540/K6M13_9 [Arabidopsis thaliana] gb|AED95827.1| Rab5-interacting family protein [Arabidopsis thaliana] 6.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transmembrane protein 0.0
C-terminus
biog3_v1.0_unigene11882 biogeco3 v1.0 689
AutoFact: WS02836.CR_K07 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02836_K07 3', mRNA sequence. 0.0
FL-Next: tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss). 0.0
Blast2go: transmembrane protein 0.0
Internal
biog3_v1.0_unigene15387 biogeco3 v1.0 167
AutoFact: [S] COG2119 Predicted membrane protein 6.0e-20
Blast2go: transmembrane protein 0.0
unknown
biog3_v1.0_unigene15902 biogeco3 v1.0 239
AutoFact: UPF0016 protein 5 [Arabidopsis thaliana] sp|Q9SX28.1|GDT15_ARATH RecName: Full=GDT1-like protein 5 gb|AAD49978.1|AC008075_11 Is a member of PF|01169 Uncharacterized (transmembrane domain) protein family [Arabidopsis thaliana] dbj|BAC43336.1| putative tran 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transmembrane protein 0.0
Internal
biog3_v1.0_unigene17008 biogeco3 v1.0 423
AutoFact: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana] gb|AAR24215.1| At1g35180 [Arabidopsis thaliana] gb|AAU05502.1| At3g16870 [Arabidopsis thaliana] gb|AEE31763.1| TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containi 1.0e-11
FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Blast2go: transmembrane protein 8.39774e-16
C-terminus
biog3_v1.0_unigene18988 biogeco3 v1.0 229
AutoFact: WS02836.CR_K07 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02836_K07 3', mRNA sequence. 0.0
Blast2go: transmembrane protein 0.0
unknown
biog3_v1.0_unigene22230 biogeco3 v1.0 258
AutoFact: DUF778 domain containing protein 0.0
Blast2go: transmembrane protein 0.0
unknown
biog3_v1.0_unigene22442 biogeco3 v1.0 360
AutoFact: [S] COG2119 Predicted membrane protein 6.0e-20
Blast2go: transmembrane protein 0.0
unknown
biog3_v1.0_unigene23492 biogeco3 v1.0 112
AutoFact: [S] COG2119 Predicted membrane protein 6.0e-20
Blast2go: transmembrane protein 0.0
unknown
biog3_v1.0_unigene24058 biogeco3 v1.0 273
AutoFact: Rab5-interacting family protein [Arabidopsis thaliana] gb|AAK32862.1|AF361850_1 AT5g49540/K6M13_9 [Arabidopsis thaliana] gb|AAM91062.1| AT5g49540/K6M13_9 [Arabidopsis thaliana] gb|AED95827.1| Rab5-interacting family protein [Arabidopsis thaliana] 6.0e-26
Blast2go: transmembrane protein 0.0
unknown
biog3_v1.0_unigene25054 biogeco3 v1.0 278
AutoFact: UPF0016 protein 5 [Arabidopsis thaliana] sp|Q9SX28.1|GDT15_ARATH RecName: Full=GDT1-like protein 5 gb|AAD49978.1|AC008075_11 Is a member of PF|01169 Uncharacterized (transmembrane domain) protein family [Arabidopsis thaliana] dbj|BAC43336.1| putative tran 0.0
Blast2go: transmembrane protein 0.0
Coding
biog3_v1.0_unigene25421 biogeco3 v1.0 194
AutoFact: DUF962 domain containing protein 1.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transmembrane protein 0.0
N-terminus
biog3_v1.0_unigene25560 biogeco3 v1.0 85
AutoFact: CytochromB561_N domain containing protein 5.0e-09
Blast2go: transmembrane protein 5.08816e-08
unknown
biog3_v1.0_unigene26122 biogeco3 v1.0 219
AutoFact: WS02836.CR_K07 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02836_K07 3', mRNA sequence. 0.0
Blast2go: transmembrane protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain