Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: rna-binding protein

Source: Description from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene1429 biogeco3 v1.0 355
• AutoFact: Putative RRM-containing protein SEB-4 n=3 Tax=Poaceae RepID=Q5N8W4_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 0.0
Internal
biog3_v1.0_unigene1436 biogeco3 v1.0 770
• AutoFact: Ribonucleoprotein, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9RAR1_RICCO 5.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 0.0
C-terminus
biog3_v1.0_unigene2151 biogeco3 v1.0 392
• AutoFact: tobacco nucleolin [Nicotiana tabacum] 5.60519e-45
• Blast2go: rna-binding protein 0.0
Coding
biog3_v1.0_unigene2374 biogeco3 v1.0 1102
• AutoFact: putative RNA-binding protein RBP37 [Oryza sativa Japonica Group] dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group] dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza s 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 0.0
Putative Complete
biog3_v1.0_unigene3571 biogeco3 v1.0 633
• AutoFact: tobacco nucleolin [Nicotiana tabacum] 5.60519e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 0.0
Internal
biog3_v1.0_unigene3910 biogeco3 v1.0 1014
• AutoFact: tobacco nucleolin [Nicotiana tabacum] 5.60519e-45
• Blast2go: rna-binding protein 0.0
Coding
biog3_v1.0_unigene7732 biogeco3 v1.0 345
• AutoFact: putative RNA-binding protein RBP37 [Oryza sativa Japonica Group] dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group] dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza s 0.0
• Blast2go: rna-binding protein 0.0
Coding
biog3_v1.0_unigene7886 biogeco3 v1.0 2460
• AutoFact: tobacco nucleolin [Nicotiana tabacum] 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 1.68156e-44
Complete
biog3_v1.0_unigene8069 biogeco3 v1.0 203
• AutoFact: oligouridylate binding protein-like protein [Solanum tuberosum] 0.0
• Blast2go: rna-binding protein 0.0
unknown
biog3_v1.0_unigene8292 biogeco3 v1.0 273
• AutoFact: protein localized in the nucleoli of pea nuclei; ORF; putative [Pisum sativum] 1.0e-33
• Blast2go: rna-binding protein 8.16201e-38
unknown
biog3_v1.0_unigene9296 biogeco3 v1.0 287
• AutoFact: tobacco nucleolin [Nicotiana tabacum] 5.60519e-45
• Blast2go: rna-binding protein 0.0
Putative coding
biog3_v1.0_unigene9737 biogeco3 v1.0 996
• AutoFact: putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group] gb|EAZ14353.1| hypothetical p 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 0.0
Complete
biog3_v1.0_unigene11420 biogeco3 v1.0 1775
• AutoFact: putative RNA-binding like protein [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 0.0
Complete
biog3_v1.0_unigene11470 biogeco3 v1.0 1328
• AutoFact: Os07g0631900 protein n=2 Tax=Oryza sativa RepID=Q8LHN4_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 0.0
Complete
biog3_v1.0_unigene11475 biogeco3 v1.0 1584
• AutoFact: oligouridylate binding protein-like protein [Solanum tuberosum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 0.0
Complete
biog3_v1.0_unigene11506 biogeco3 v1.0 1766
• AutoFact: Heterogeneous nuclear ribonucleoprotein A3-like protein 2 n=3 Tax=Andropogoneae RepID=B6TV58_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 0.0
Putative Complete
biog3_v1.0_unigene11672 biogeco3 v1.0 986
• AutoFact: protein localized in the nucleoli of pea nuclei; ORF; putative [Pisum sativum] 1.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 8.16201e-38
N-terminus
biog3_v1.0_unigene12188 biogeco3 v1.0 195
• AutoFact: putative RNA-binding like protein [Oryza sativa Japonica Group] 0.0
• Blast2go: rna-binding protein 0.0
unknown
biog3_v1.0_unigene16917 biogeco3 v1.0 217
• AutoFact: putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] dbj|BAD82096.1| putative RRM-containing protein SEB-4 [Oryza sativa Japonica Group] gb|EAY76689.1| hypothetical protein OsI_04643 [Oryza sativa Indica Group] gb|EAZ14353.1| hypothetical p 0.0
• Blast2go: rna-binding protein 0.0
unknown
biog3_v1.0_unigene17214 biogeco3 v1.0 253
• AutoFact: Putative RRM-containing protein SEB-4 n=3 Tax=Poaceae RepID=Q5N8W4_ORYSJ 0.0
• Blast2go: rna-binding protein 0.0
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain