Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: rna binding

Source: Description from Blast2go

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene861 biogeco3 v1.0 390
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Putative N-terminus
biog3_v1.0_unigene1173 biogeco3 v1.0 1664
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9S3Y1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Complete
biog3_v1.0_unigene1684 biogeco3 v1.0 618
• AutoFact: putative Ras-GTPase-activating protein binding protein 1 [Oryza sativa Japonica Group] dbj|BAG91794.1| unnamed protein product [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
N-terminus
biog3_v1.0_unigene2276 biogeco3 v1.0 442
• AutoFact: putative Ras-GTPase-activating protein binding protein 1 [Oryza sativa Japonica Group] dbj|BAG91794.1| unnamed protein product [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
C-terminus
biog3_v1.0_unigene3929 biogeco3 v1.0 577
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAM10328.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AAN18203.1| At2g44720/F16B22.21 [Arabidopsis thaliana] gb|AEC10458.1| RNA recognition motif-containing protein [Arabidopsis thalia 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Putative N-terminus
biog3_v1.0_unigene4449 biogeco3 v1.0 273
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Putative C-terminus
biog3_v1.0_unigene5074 biogeco3 v1.0 223
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SP17_VITVI 0.0
• Blast2go: rna binding 0.0
Putative coding
biog3_v1.0_unigene5856 biogeco3 v1.0 1134
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SP17_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Putative C-terminus
biog3_v1.0_unigene6301 biogeco3 v1.0 1343
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
C-terminus
biog3_v1.0_unigene9356 biogeco3 v1.0 695
• AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB10647.1| unnamed protein product [Arabidopsis thaliana] gb|AAL32982.1| AT5g60980/MSL3_100 [Arabidopsis thaliana] gb|AAO23575.1| At5g60980/MSL3_100 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
C-terminus
biog3_v1.0_unigene10352 biogeco3 v1.0 665
• AutoFact: nuclear transport factor 2 and RNA recognition motif domain-containing protein [Arabidopsis thaliana] dbj|BAB10647.1| unnamed protein product [Arabidopsis thaliana] gb|AAL32982.1| AT5g60980/MSL3_100 [Arabidopsis thaliana] gb|AAO23575.1| At5g60980/MSL3_100 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Putative N-terminus
biog3_v1.0_unigene10925 biogeco3 v1.0 641
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SP17_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Putative C-terminus
biog3_v1.0_unigene11340 biogeco3 v1.0 1034
• AutoFact: RNA recognition water-stress protein1 [Zea mays] gb|AAN04093.1| water-stress protein [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Putative Complete
biog3_v1.0_unigene12070 biogeco3 v1.0 2845
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Complete
biog3_v1.0_unigene13930 biogeco3 v1.0 465
• AutoFact: Unassigned protein
• FL-Next: sp=Zinc finger CCCH domain-containing protein 53; Oryza sativa subsp. japonica (Rice). 0.0
• Blast2go: rna binding 0.0
Internal
biog3_v1.0_unigene14632 biogeco3 v1.0 375
• AutoFact: Unassigned protein
• FL-Next: sp=Zinc finger CCCH domain-containing protein 18; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna binding 0.0
Internal
biog3_v1.0_unigene16099 biogeco3 v1.0 423
• AutoFact: RNA-binding protein-like [Oryza sativa Japonica Group] gb|EEE69405.1| hypothetical protein OsJ_28765 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
Internal
biog3_v1.0_unigene16111 biogeco3 v1.0 264
• AutoFact: putative Ras-GTPase-activating protein binding protein 1 [Oryza sativa Japonica Group] dbj|BAG91794.1| unnamed protein product [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
N-terminus
biog3_v1.0_unigene17847 biogeco3 v1.0 288
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBN7_RICCO 0.0
• FL-Next: sp=Pumilio homolog 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: rna binding 0.0
Internal
biog3_v1.0_unigene18567 biogeco3 v1.0 317
• AutoFact: Unassigned protein
• Blast2go: rna binding 0.0
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain