Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: DNA-directed RNA polymerase, subunit 2, domain 6

Term: IPR007120  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene612 biogeco3 v1.0 337
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh62-like 0.0
Internal
biog3_v1.0_unigene797 biogeco3 v1.0 374
AutoFact: DNA-directed RNA polymerase n=26 Tax=Embryophyta RepID=A9SJE5_PHYPA 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Blast2go: rna polymerase ii second largest subunit 0.0
Internal
biog3_v1.0_unigene1135 biogeco3 v1.0 365
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh62-like 0.0
Putative C-terminus
biog3_v1.0_unigene1824 biogeco3 v1.0 448
AutoFact: Helix-loop-helix protein 1A n=1 Tax=Pinus taeda RepID=Q9SQ79_PINTA 0.0
FL-Next: tr=Helix-loop-helix protein 1A; Pinus taeda (Loblolly pine). 0.0
Blast2go: transcription factor bhlh130-like 0.0
Internal
biog3_v1.0_unigene2281 biogeco3 v1.0 287
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 4.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bhlh transcription factor 0.0
Putative C-terminus
biog3_v1.0_unigene5181 biogeco3 v1.0 1340
AutoFact: DNA-directed RNA polymerase n=26 Tax=Embryophyta RepID=A9SJE5_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna polymerase ii second largest subunit 0.0
Complete
biog3_v1.0_unigene6105 biogeco3 v1.0 1234
AutoFact: Transcription factor bHLH62 n=1 Tax=Arabidopsis thaliana RepID=BH062_ARATH 7.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bpe 0.0
Complete
biog3_v1.0_unigene8125 biogeco3 v1.0 295
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 3.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh62-like 0.0
Internal
biog3_v1.0_unigene8938 biogeco3 v1.0 704
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 4.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: bhlh transcription factor 0.0
C-terminus
biog3_v1.0_unigene9046 biogeco3 v1.0 292
AutoFact: basic helix-loop-helix (bHLH) -like [Oryza sativa Japonica Group] dbj|BAD19276.1| basic helix-loop-helix (bHLH) -like [Oryza sativa Japonica Group] 2.00386e-43
FL-Next: sp=Transcription factor bHLH82; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein 0.0
Putative C-terminus
biog3_v1.0_unigene9269 biogeco3 v1.0 230
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TX75_VITVI 0.0
FL-Next: sp=DNA-directed RNA polymerase; Vitis vinifera (Grape). 0.0
Blast2go: dna-directed rna polymerase i subunit rpa2 0.0
Internal
biog3_v1.0_unigene13551 biogeco3 v1.0 481
AutoFact: transcription factor bHLH76 [Arabidopsis thaliana] gb|AAS79545.1| putative transcription factor [Arabidopsis thaliana] emb|CAG25856.1| hypothetical protein [Arabidopsis thaliana] gb|AEE30669.1| transcription factor bHLH76 [Arabidopsis thaliana] 3.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: transcription factor bhlh76 0.0
Putative C-terminus
biog3_v1.0_unigene15230 biogeco3 v1.0 429
AutoFact: DNA-directed RNA polymerase n=4 Tax=Solanaceae RepID=Q1L5Z1_SOLLC 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii second largest subunit 0.0
Internal
biog3_v1.0_unigene15595 biogeco3 v1.0 445
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TX75_VITVI 0.0
FL-Next: sp=DNA-directed RNA polymerase D subunit 2a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna-directed rna polymerase i subunit rpa2 0.0
Internal
biog3_v1.0_unigene18068 biogeco3 v1.0 270
AutoFact: Helix-loop-helix protein 1A n=1 Tax=Pinus taeda RepID=Q9SQ79_PINTA 0.0
FL-Next: tr=Helix-loop-helix protein 1A; Pinus taeda (Loblolly pine). 0.0
Blast2go: transcription factor bhlh130-like 0.0
Internal
biog3_v1.0_unigene18514 biogeco3 v1.0 203
AutoFact: DNA-directed RNA polymerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RNX6_PHYPA 0.0
FL-Next: sp=DNA-directed RNA polymerase; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: dna-directed rna polymerase iii subunit rpc2 0.0
Internal
biog3_v1.0_unigene19956 biogeco3 v1.0 208
AutoFact: DNA-directed RNA polymerase n=26 Tax=Embryophyta RepID=A9SJE5_PHYPA 0.0
FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: rna polymerase ii second largest subunit 0.0
Internal
biog3_v1.0_unigene21223 biogeco3 v1.0 371
AutoFact: putative bHLH transcription factor [Arabidopsis thaliana] 3.0e-39
Blast2go: transcription factor bhlh62-like 0.0
Putative coding
biog3_v1.0_unigene22803 biogeco3 v1.0 428
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TX75_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: dna-directed rna polymerase i subunit rpa2 0.0
Putative Complete
biog3_v1.0_unigene23114 biogeco3 v1.0 289
AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna polymerase iv second largest subunit 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain