Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: DNA topoisomerase, type IIA, conserved site

Term: IPR018522  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene674 biogeco3 v1.0 397
AutoFact: Serine/threonine-protein phosphatase (Fragment) n=5 Tax=Magnoliophyta RepID=D7T1Q5_VITVI 0.0
Blast2go: serine threonine-protein phosphatase bsl2-like 0.0
Putative coding
biog3_v1.0_unigene1007 biogeco3 v1.0 425
AutoFact: Pollen tube RhoGDI2 n=1 Tax=Nicotiana tabacum RepID=Q1ZZN8_TOBAC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
N-terminus
biog3_v1.0_unigene1386 biogeco3 v1.0 339
AutoFact: Regulatory protein NPR1, putative n=1 Tax=Ricinus communis RepID=B9RK83_RICCO 0.0
FL-Next: sp=Regulatory protein NPR4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: non-inducible immunity 1 0.0
Internal
biog3_v1.0_unigene2267 biogeco3 v1.0 419
AutoFact: Serine/threonine-protein phosphatase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TP64_VITVI 0.0
FL-Next: sp=Serine/threonine-protein phosphatase BSL1 homolog; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: serine threonine protein phosphatase 0.0
Internal
biog3_v1.0_unigene2544 biogeco3 v1.0 907
AutoFact: Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: probable xyloglucan endotransglucosylase hydrolase protein 23 0.0
C-terminus
biog3_v1.0_unigene3036 biogeco3 v1.0 296
AutoFact: Regulatory protein NPR1, putative n=1 Tax=Ricinus communis RepID=B9RK83_RICCO 0.0
FL-Next: sp=Regulatory protein NPR4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: non-inducible immunity 1 0.0
Internal
biog3_v1.0_unigene3093 biogeco3 v1.0 278
AutoFact: Serine/threonine-protein phosphatase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TP64_VITVI 0.0
FL-Next: sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine protein phosphatase 0.0
Putative N-terminus
biog3_v1.0_unigene3122 biogeco3 v1.0 1295
AutoFact: Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: xyloglucan endotransglucosylase hydrolase protein 9 0.0
Complete
biog3_v1.0_unigene3218 biogeco3 v1.0 416
AutoFact: AINTEGUMENTA-like protein n=1 Tax=Pinus thunbergii RepID=Q76H96_PINTH 0.0
FL-Next: tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Blast2go: ap2 domain-containing transcription factor 0.0
C-terminus
biog3_v1.0_unigene3413 biogeco3 v1.0 534
AutoFact: Serine/threonine-protein phosphatase n=1 Tax=Picea sitchensis RepID=C0PPR8_PICSI 0.0
FL-Next: sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine protein phosphatase pp1 0.0
Internal
biog3_v1.0_unigene3692 biogeco3 v1.0 413
AutoFact: xyloglucan endotransglycosylase/hydrolase precursor XTH-30 [Populus tremula] 0.0
Blast2go: xyloglucan endotransglucosylase hydrolase protein 9 0.0
unknown
biog3_v1.0_unigene3754 biogeco3 v1.0 362
AutoFact: Serine/threonine-protein phosphatase (Fragment) n=5 Tax=Magnoliophyta RepID=D7T1Q5_VITVI 0.0
FL-Next: sp=Serine/threonine-protein phosphatase BSL3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: serine threonine-protein phosphatase bsl2-like 0.0
Internal
biog3_v1.0_unigene3985 biogeco3 v1.0 427
AutoFact: AP2-related transcription factor AP2L3 (Fragment) n=2 Tax=Picea RepID=Q106U2_PICAB 0.0
FL-Next: tr=APETALA2-like protein 1; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Blast2go: floral homeotic protein 0.0
Internal
biog3_v1.0_unigene4644 biogeco3 v1.0 1230
AutoFact: Putative Rho GDP dissociation inhibitor n=1 Tax=Nicotiana tabacum RepID=Q9M404_TOBAC 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rho gdp-dissociation 0.0
Complete
biog3_v1.0_unigene4987 biogeco3 v1.0 1142
AutoFact: Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: xyloglucan endotransglucosylase hydrolase protein 9 0.0
Complete
biog3_v1.0_unigene8404 biogeco3 v1.0 345
AutoFact: Regulatory protein NPR1, putative n=1 Tax=Ricinus communis RepID=B9RK83_RICCO 0.0
Blast2go: non-inducible immunity 1 0.0
unknown
biog3_v1.0_unigene8777 biogeco3 v1.0 812
AutoFact: Serine/threonine-protein phosphatase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S2C2_PHYPA 0.0
FL-Next: sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine-protein phosphatase bsl3 0.0
C-terminus
biog3_v1.0_unigene9498 biogeco3 v1.0 301
AutoFact: putative AP2 domain transcription factor [Arabidopsis thaliana] 0.0
FL-Next: tr=DNA binding protein, putative; Ricinus communis (Castor bean). 0.0
Blast2go: ap2-like ethylene-responsive transcription factor 0.0
Internal
biog3_v1.0_unigene9530 biogeco3 v1.0 676
AutoFact: Serine/threonine-protein phosphatase (Fragment) n=5 Tax=Magnoliophyta RepID=D7T1Q5_VITVI 0.0
FL-Next: sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: serine threonine-protein phosphatase bsl3 0.0
Putative N-terminus
biog3_v1.0_unigene10838 biogeco3 v1.0 468
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 0.0
FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna topoisomerase ii 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain