Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: Chromo domain/shadow

Term: IPR000953  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene21175 biogeco3 v1.0 255
AutoFact: putative protein kinase [Oryza sativa Japonica Group] 3.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: receptor protein kinase 2.89105e-34
Internal
biog3_v1.0_unigene21323 biogeco3 v1.0 296
AutoFact: PREDICTED: similar to polyprotein n=1 Tax=Vitis vinifera RepID=UPI0001983558 0.0
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) 0.0
Putative C-terminus
biog3_v1.0_unigene21536 biogeco3 v1.0 263
AutoFact: Pol protein integrase region (Fragment) n=1 Tax=Pinus brutia RepID=Q9M6N4_9CONI 5.0e-37
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: pol protein integrase region 0.0
Putative C-terminus
biog3_v1.0_unigene21729 biogeco3 v1.0 268
AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 1.0e-23
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: retrotransposon unclassified 3.33279e-29
Putative N-terminus
biog3_v1.0_unigene21787 biogeco3 v1.0 321
AutoFact: Unassigned protein
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Blast2go: disease resistance protein 2.01991e-25
Putative C-terminus
biog3_v1.0_unigene21963 biogeco3 v1.0 256
AutoFact: Kinase-like protein (Fragment) n=4 Tax=Corylus avellana RepID=C7A7Q0_CORAV 1.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: kinase-like protein 3.1767e-29
Internal
biog3_v1.0_unigene22083 biogeco3 v1.0 160
AutoFact: Dimer_Tnp_hAT domain containing protein 8.0e-11
Blast2go: unknown [Picea sitchensis] 1.02347e-36
unknown
biog3_v1.0_unigene22099 biogeco3 v1.0 305
AutoFact: SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJL1_PHYPA 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: snf2 family dna-dependent atpase 5.73387e-29
Internal
biog3_v1.0_unigene23419 biogeco3 v1.0 367
AutoFact: OSJNBa0024J22.19 protein n=2 Tax=Oryza sativa RepID=Q7XRN3_ORYSJ 0.0
FL-Next: tr=OSJNBa0024J22.19 protein; Oryza sativa subsp. japonica (Rice). 0.0
Blast2go: retrotransposon ty3-gypsy subclass 0.0
Internal
biog3_v1.0_unigene23772 biogeco3 v1.0 247
AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 2.0e-22
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: retrotransposon protein 1.87504e-27
Putative Complete
biog3_v1.0_unigene23836 biogeco3 v1.0 346
AutoFact: chromodomain-helicase-DNA-binding protein-like protein [Oryza sativa Japonica Group] dbj|BAD30688.1| chromodomain-helicase-DNA-binding protein-like protein [Oryza sativa Japonica Group] 2.0e-17
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: chromodomain-helicase-dna-binding protein 6.78532e-28
Internal
biog3_v1.0_unigene23889 biogeco3 v1.0 274
AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SDY6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: l-type lectin-domain containing receptor kinase -like 0.0
Internal
biog3_v1.0_unigene23908 biogeco3 v1.0 454
AutoFact: Unassigned protein
FL-Next: sp=Helicase protein MOM1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
Internal
biog3_v1.0_unigene24602 biogeco3 v1.0 238
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold 5.53793e-35
Internal
biog3_v1.0_unigene24634 biogeco3 v1.0 234
AutoFact: chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] dbj|BAF34944.1| chromatin remodeling factor DDM1a [Oryza sativa Japonica Group] gb|EEE69802.1| hypothetical protein OsJ_29535 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: chromatin remodeling complex subunit 0.0
N-terminus
biog3_v1.0_unigene24729 biogeco3 v1.0 560
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: rna-directed dna polymerase (reverse transcriptase) chromo zinc cchc-type peptidase active site polynucleotidyl ribonuclease h fold 0.0
Putative Complete
biog3_v1.0_unigene25017 biogeco3 v1.0 351
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 7.0e-21
FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
Blast2go: ac069473_8gypsy ty-3 retroelement polyprotein 69905-74404 1.55313e-21
Putative C-terminus
biog3_v1.0_unigene25506 biogeco3 v1.0 161
AutoFact: Probable L-type lectin-domain containing receptor kinase S.5 n=2 Tax=Arabidopsis RepID=LRKS5_ARATH 0.0
Blast2go: probable l-type lectin-domain containing receptor kinase -like 0.0
unknown
biog3_v1.0_unigene25696 biogeco3 v1.0 409
AutoFact: HAT family dimerization domain-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4KHA1_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hat family dimerization domain-containing protein 0.0
C-terminus
biog3_v1.0_unigene25981 biogeco3 v1.0 307
AutoFact: Cinnamoyl-CoA reductase n=2 Tax=Malvoideae RepID=D9ZKR8_9ROSI 0.0
FL-Next: tr=Cinnamoyl-CoA reductase; Pinus massoniana. 0.0
Blast2go: cinnamoyl reductase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain