Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: Reverse transcriptase

Term: IPR000477  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene24 biogeco3 v1.0 2111
AutoFact: CER1; CER1 (ECERIFERUM 1); octadecanal decarbonylase (EC:4.1.99.5) 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein wax2-like 0.0
C-terminus
biog3_v1.0_unigene189 biogeco3 v1.0 609
AutoFact: oligopeptidase B [Arabidopsis thaliana] gb|AAD50051.1|AC007980_16 Similar to oligopeptidases [Arabidopsis thaliana] gb|AAL84967.1| At1g50380/F14I3_27 [Arabidopsis thaliana] gb|AEE32542.1| oligopeptidase B [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Zea mays (Maize). 0.0
Blast2go: oligopeptidase b 0.0
C-terminus
biog3_v1.0_unigene249 biogeco3 v1.0 493
AutoFact: mate efflux domain-containing protein [Arabidopsis thaliana] dbj|BAB02363.1| unnamed protein product [Arabidopsis thaliana] gb|AAU05531.1| At3g21690 [Arabidopsis thaliana] gb|AEE76538.1| mate efflux domain-containing protein [Arabidopsis thaliana] 0.0
Blast2go: transparent testa 12 0.0
Putative coding
biog3_v1.0_unigene265 biogeco3 v1.0 588
AutoFact: Hydroxyproline-rich glycoprotein family protein n=3 Tax=Arabidopsis RepID=Q9LZ00_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hydroxyproline-rich glycoprotein family protein 0.0
Internal
biog3_v1.0_unigene282 biogeco3 v1.0 414
AutoFact: protein PIR [Arabidopsis thaliana] gb|AAS78644.1| ARP2/3 regulatory protein subunit PIRP [Arabidopsis thaliana] gb|AAT71307.1| PIROGI [Arabidopsis thaliana] tpg|DAA04564.1| TPA_exp: PIRP [Arabidopsis thaliana] gb|AED92557.1| protein PIR [Arabidopsis thali 0.0
FL-Next: sp=Protein PIR; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: protein pir 0.0
N-terminus
biog3_v1.0_unigene299 biogeco3 v1.0 399
AutoFact: oligoribonuclease [Arabidopsis thaliana] sp|Q9ZVE0.2|ORN_ARATH RecName: Full=Oligoribonuclease gb|AAL36387.1| unknown protein [Arabidopsis thaliana] gb|AAN71962.1| unknown protein [Arabidopsis thaliana] gb|AEC07912.1| oligoribonuclease [Arabidopsis thalia 0.0
Blast2go: oligoribonuclease 0.0
unknown
biog3_v1.0_unigene328 biogeco3 v1.0 328
AutoFact: Sphingosine kinase n=1 Tax=Lotus japonicus RepID=Q5KR50_LOTJA 0.0
FL-Next: sp=Sphingoid long-chain bases kinase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: sphingoid long-chain bases kinase 1 0.0
Internal
biog3_v1.0_unigene363 biogeco3 v1.0 923
AutoFact: Intron maturase, type II family protein [Arabidopsis thaliana] dbj|BAB10231.1| unnamed protein product [Arabidopsis thaliana] gb|AED95448.1| Intron maturase, type II family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized mitochondrial protein ymf11-like 0.0
Putative C-terminus
biog3_v1.0_unigene371 biogeco3 v1.0 417
AutoFact: Unassigned protein
Blast2go: protein 0.0
Coding
biog3_v1.0_unigene514 biogeco3 v1.0 714
AutoFact: AAA-type ATPase family protein [Arabidopsis thaliana] dbj|BAF01763.1| hypothetical protein [Arabidopsis thaliana] gb|AEE82177.1| AAA-type ATPase family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
biog3_v1.0_unigene605 biogeco3 v1.0 258
AutoFact: pfam05495, zf-CHY, CHY zinc finger 6.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: zinc finger 0.0
Internal
biog3_v1.0_unigene639 biogeco3 v1.0 642
AutoFact: chloride channel protein CLC-f [Arabidopsis thaliana] sp|Q8RXR2.2|CLCF_ARATH RecName: Full=Chloride channel protein CLC-f; Short=AtCLC-f gb|AAK53391.1|AF366368_1 CLC-f chloride channel protein [Arabidopsis thaliana] emb|CAC36386.1| hypothetical protein [A 0.0
FL-Next: Isoform 2 of Chloride channel protein CLC-f OS=Arabidopsis thaliana GN=CLC-F 0.0
Blast2go: chloride channel protein clc-f-like 0.0
Internal
biog3_v1.0_unigene647 biogeco3 v1.0 518
AutoFact: pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: smc3 protein 0.0
Putative C-terminus
biog3_v1.0_unigene691 biogeco3 v1.0 323
AutoFact: [R] COG2319 FOG: WD40 repeat 4.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein spa1-related 3-like 0.0
N-terminus
biog3_v1.0_unigene697 biogeco3 v1.0 369
AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE83159.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Internal
biog3_v1.0_unigene734 biogeco3 v1.0 422
AutoFact: pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal 7.0e-11
FL-Next: tr=Transcription cofactor, putative; Ricinus communis (Castor bean). 0.0
Blast2go: ac034256_12est gb 0.0
Internal
biog3_v1.0_unigene766 biogeco3 v1.0 759
AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 0.0
FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
N-terminus
biog3_v1.0_unigene957 biogeco3 v1.0 347
AutoFact: Eukaryotic release factor 1 (ERF1) family protein n=2 Tax=Arabidopsis RepID=Q9ZT87_ARATH 0.0
FL-Next: tr=Pelota, putative; Ricinus communis (Castor bean). 0.0
Blast2go: eukaryotic release factor 1 family protein 0.0
Internal
biog3_v1.0_unigene1089 biogeco3 v1.0 866
AutoFact: Nuclear transcription factor Y subunit C-2 n=2 Tax=Arabidopsis RepID=NFYC2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear transcription factor y subunit c-2 0.0
Putative Complete
biog3_v1.0_unigene1190 biogeco3 v1.0 589
AutoFact: flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] 0.0
Blast2go: protein 0.0
Coding

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain