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Assembly Name: biogeco3 v1.0

Name: Reverse transcriptase

Term: IPR000477  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene4375 biogeco3 v1.0 327
AutoFact: pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal 7.0e-11
FL-Next: tr=CTV.22; Poncirus trifoliata (Hardy orange). 0.0
Blast2go: ac034256_12est gb 0.0
Internal
biog3_v1.0_unigene4416 biogeco3 v1.0 531
AutoFact: pfam05691, Raffinose_syn, Raffinose synthase or seed inhibition protein Sip1 0.0
FL-Next: Isoform 3 of Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 0.0
Blast2go: alkaline alpha galactosidase 0.0
Internal
biog3_v1.0_unigene4442 biogeco3 v1.0 1803
AutoFact: THO complex subunit 1 [Arabidopsis thaliana] gb|AAL11560.1|AF424566_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gb|AAL16253.1|AF428323_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gb|AED91456.1| THO complex subunit 1 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: tho complex subunit 1-like 0.0
C-terminus
biog3_v1.0_unigene4490 biogeco3 v1.0 313
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: retrotransposon unclassified 0.0
Internal
biog3_v1.0_unigene4542 biogeco3 v1.0 313
AutoFact: UDP-glucose:glycoprotein glucosyltransferase n=3 Tax=Arabidopsis RepID=F4I8G1_ARATH 0.0
FL-Next: sp=UDP-glucose:glycoprotein glucosyltransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: udp-glucose:glycoprotein glucosyltransferase 0.0
Internal
biog3_v1.0_unigene4551 biogeco3 v1.0 359
AutoFact: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T1Y8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: ddb1- and cul4-associated factor 8-like 0.0
C-terminus
biog3_v1.0_unigene4651 biogeco3 v1.0 492
AutoFact: FACT complex subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TYN6_PHYPA 0.0
FL-Next: sp=FACT complex subunit SPT16; Zea mays (Maize). 0.0
Blast2go: fact complex subunit 0.0
Internal
biog3_v1.0_unigene4687 biogeco3 v1.0 964
AutoFact: chloride channel protein CLC-f [Arabidopsis thaliana] sp|Q8RXR2.2|CLCF_ARATH RecName: Full=Chloride channel protein CLC-f; Short=AtCLC-f gb|AAK53391.1|AF366368_1 CLC-f chloride channel protein [Arabidopsis thaliana] emb|CAC36386.1| hypothetical protein [A 0.0
FL-Next: Isoform 2 of Chloride channel protein CLC-f OS=Arabidopsis thaliana GN=CLC-F 0.0
Blast2go: chloride channel protein clc-f-like 0.0
C-terminus
biog3_v1.0_unigene4693 biogeco3 v1.0 240
AutoFact: FPL domain containing protein 7.0e-26
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: protein 0.0
Putative C-terminus
biog3_v1.0_unigene4727 biogeco3 v1.0 277
AutoFact: NUC130/3NT and SDA1 domain-containing protein [Arabidopsis thaliana] dbj|BAE98871.1| hypothetical protein [Arabidopsis thaliana] gb|AEE28977.1| NUC130/3NT and SDA1 domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Blast2go: protein sda1 homolog 0.0
Internal
biog3_v1.0_unigene4759 biogeco3 v1.0 1327
AutoFact: myosin XI [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: myosin-h heavy chain-like 0.0
C-terminus
biog3_v1.0_unigene4761 biogeco3 v1.0 413
AutoFact: Unassigned protein
FL-Next: Isoform 2 of Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 0.0
Blast2go: pumilio 23 0.0
Internal
biog3_v1.0_unigene4797 biogeco3 v1.0 640
AutoFact: unconventional myosin [Helianthus annuus] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: myosin-h heavy chain-like 0.0
Internal
biog3_v1.0_unigene4843 biogeco3 v1.0 710
AutoFact: FACT complex subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TYN6_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: fact complex subunit 0.0
Internal
biog3_v1.0_unigene4883 biogeco3 v1.0 301
AutoFact: Trehalose-6-phosphate synthase, putative n=1 Tax=Ricinus communis RepID=B9SZ18_RICCO 0.0
FL-Next: sp=Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: trehalose-6-phosphate synthase 0.0
Internal
biog3_v1.0_unigene4885 biogeco3 v1.0 405
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TE60_VITVI 0.0
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: dna topoisomerase i 0.0
C-terminus
biog3_v1.0_unigene4893 biogeco3 v1.0 337
AutoFact: putative ubiquitin-protein ligase 1 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=E3 ubiquitin-protein ligase UPL2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: ubiquitin-protein ligase 1 0.0
Internal
biog3_v1.0_unigene4901 biogeco3 v1.0 345
AutoFact: UDP-glucose:glycoprotein glucosyltransferase n=3 Tax=Arabidopsis RepID=F4I8G1_ARATH 0.0
FL-Next: sp=UDP-glucose:glycoprotein glucosyltransferase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: udp-glucose:glycoprotein glucosyltransferase 0.0
Internal
biog3_v1.0_unigene4912 biogeco3 v1.0 818
AutoFact: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTL0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: calmodulin binding 0.0
Putative Complete
biog3_v1.0_unigene4918 biogeco3 v1.0 411
AutoFact: F-box protein At-B [Arabidopsis thaliana] sp|Q9ZWC6.1|ATB_ARATH RecName: Full=F-box protein At-B gb|AAF79512.1|AC002328_20 F20N2.2 [Arabidopsis thaliana] gb|AAM26672.1| At1g55590/F20N2_18 [Arabidopsis thaliana] gb|AAN46816.1| At1g55590/F20N2_18 [Arabidops 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: f-box protein at-b-like 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain