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Assembly Name: biogeco3 v1.0

Name: Retrotransposon gag protein

Term: IPR005162  Help

Source: InterPro from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
biog3_v1.0_unigene154 biogeco3 v1.0 484
AutoFact: HAT family dimerisation domain containing protein n=2 Tax=Oryza sativa RepID=Q2R1C3_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein Sb02g011180; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Blast2go: uncharacterized protein loc100780312 0.0
Internal
biog3_v1.0_unigene299 biogeco3 v1.0 399
AutoFact: oligoribonuclease [Arabidopsis thaliana] sp|Q9ZVE0.2|ORN_ARATH RecName: Full=Oligoribonuclease gb|AAL36387.1| unknown protein [Arabidopsis thaliana] gb|AAN71962.1| unknown protein [Arabidopsis thaliana] gb|AEC07912.1| oligoribonuclease [Arabidopsis thalia 0.0
Blast2go: oligoribonuclease 0.0
unknown
biog3_v1.0_unigene502 biogeco3 v1.0 490
AutoFact: Receptor-like protein kinase n=2 Tax=Glycine max RepID=C6ZRW9_SOYBN 0.0
FL-Next: tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca). 0.0
Blast2go: leucine-rich receptor-like protein kinase bam1 0.0
C-terminus
biog3_v1.0_unigene723 biogeco3 v1.0 753
AutoFact: BAH and TFIIS domain-containing protein [Arabidopsis thaliana] emb|CAB41133.1| putative protein [Arabidopsis thaliana] gb|AEE78362.1| BAH and TFIIS domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: bah and tfiis domain-containing protein 0.0
Internal
biog3_v1.0_unigene1112 biogeco3 v1.0 1232
AutoFact: vesicle-associated membrane protein-associated protein [Triticum aestivum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: vesicle-associated membrane 0.0
Complete
biog3_v1.0_unigene1332 biogeco3 v1.0 793
AutoFact: Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] gb|AEE31438.1| Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein iws1 homolog 0.0
N-terminus
biog3_v1.0_unigene1559 biogeco3 v1.0 1273
AutoFact: [C] COG0584 Glycerophosphoryl diester phosphodiesterase 3.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycerophosphoryl diester 0.0
Putative C-terminus
biog3_v1.0_unigene2076 biogeco3 v1.0 610
AutoFact: Ubiquitin-specific protease family C19-related protein [Arabidopsis thaliana] sp|Q9FZ45.1|Y1686_ARATH RecName: Full=Uncharacterized membrane protein At1g16860 gb|AAF99847.1|AC051629_14 Unknown protein [Arabidopsis thaliana] gb|AAK92824.1| unknown protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: uncharacterized membrane protein at1g16860-like 0.0
C-terminus
biog3_v1.0_unigene2607 biogeco3 v1.0 820
AutoFact: Lipid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S1J0_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: enhanced disease resistance 2 protein 0.0
Putative C-terminus
biog3_v1.0_unigene2793 biogeco3 v1.0 656
AutoFact: putative protein kinase [Oryza sativa Japonica Group] gb|EEE59981.1| hypothetical protein OsJ_12694 [Oryza sativa Japonica Group] 8.99998e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: map protein kinase 0.0
C-terminus
biog3_v1.0_unigene2985 biogeco3 v1.0 261
AutoFact: Nckap1 domain containing protein 0.0
FL-Next: Isoform 2 of Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 0.0
Blast2go: protein nap1 0.0
Internal
biog3_v1.0_unigene3103 biogeco3 v1.0 2168
AutoFact: putative CCAAT-binding transcription factor [Oryza sativa Japonica Group] 1.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: nuclear transcription factor y subunit a-9-like 0.0
Complete
biog3_v1.0_unigene3190 biogeco3 v1.0 529
AutoFact: [C] COG0584 Glycerophosphoryl diester phosphodiesterase 3.0e-12
Blast2go: glycerophosphoryl diester 0.0
unknown
biog3_v1.0_unigene3440 biogeco3 v1.0 427
AutoFact: Myosin_tail_1 multi-domain protein 7.0e-06
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Blast2go: uncharacterized protein loc100252352 4.2039e-45
Internal
biog3_v1.0_unigene3528 biogeco3 v1.0 478
AutoFact: Amino acid transport protein AAT1 n=3 Tax=Arabidopsis RepID=Q84MA5_ARATH 0.0
FL-Next: tr=Amino acid transport protein AAT1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: cationic amino acid 0.0
Internal
biog3_v1.0_unigene3574 biogeco3 v1.0 467
AutoFact: Glycerophosphoryl diester phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9SSQ8_RICCO 0.0
FL-Next: sp=Probable glycerophosphoryl diester phosphodiesterase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Blast2go: glycerophosphoryl diester phosphodiesterase family protein 0.0
Internal
biog3_v1.0_unigene4315 biogeco3 v1.0 1124
AutoFact: splicing factor 3B subunit 3 [Arabidopsis thaliana] ref|NP_567016.1| putative splicing factor [Arabidopsis thaliana] emb|CAB75754.1| spliceosomal-like protein [Arabidopsis thaliana] emb|CAB75756.1| spliceosomal-like protein [Arabidopsis thaliana] gb|AEE79 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: protein 0.0
Complete
biog3_v1.0_unigene4345 biogeco3 v1.0 488
AutoFact: Disease resistance protein n=1 Tax=Solanum lycopersicum RepID=Q9ZTK1_SOLLC 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: hcr2- 5.49539e-37
Internal
biog3_v1.0_unigene4490 biogeco3 v1.0 313
AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Blast2go: retrotransposon unclassified 0.0
Internal
biog3_v1.0_unigene4903 biogeco3 v1.0 382
AutoFact: Glycerophosphoryl diester phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9SSQ8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Blast2go: glycerophosphoryl diester phosphodiesterase family protein 0.0
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain