Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: Zinc finger, RING-type

Term: IPR001841  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene3785 biogeco3 v1.0 612
• AutoFact: DUF1117 multi-domain protein 3.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: e3 ubiquitin-protein ligase ring1-like 0.0
Putative C-terminus
biog3_v1.0_unigene3818 biogeco3 v1.0 352
• AutoFact: Protein ariadne-1, putative n=1 Tax=Ricinus communis RepID=B9RZD6_RICCO 0.0
• FL-Next: sp=Probable E3 ubiquitin-protein ligase ARI2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: protein ariadne- 0.0
Internal
biog3_v1.0_unigene3822 biogeco3 v1.0 420
• AutoFact: Chromatin remodeling complex subunit (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H8S6_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: helicase-like transcription factor 0.0
Internal
biog3_v1.0_unigene3831 biogeco3 v1.0 1059
• AutoFact: Copine I-like protein n=4 Tax=Oryza RepID=Q6YYC5_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: e3 ubiquitin-protein ligase rglg2-like 0.0
C-terminus
biog3_v1.0_unigene3865 biogeco3 v1.0 1133
• AutoFact: DUF1644 domain containing protein 6.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: uncharacterized protein 0.0
N-terminus
biog3_v1.0_unigene3915 biogeco3 v1.0 773
• AutoFact: cellulose synthase 6 [Eucalyptus grandis] 0.0
• FL-Next: tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis). 0.0
• Blast2go: cellulose synthase 0.0
N-terminus
biog3_v1.0_unigene4006 biogeco3 v1.0 1268
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
• Blast2go: ring u-box domain-containing protein 0.0
Putative C-terminus
biog3_v1.0_unigene4039 biogeco3 v1.0 620
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RRE2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ankyrin-like protein 0.0
Complete
biog3_v1.0_unigene4062 biogeco3 v1.0 517
• AutoFact: putative kinesin [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: kinesin heavy chain 0.0
Internal
biog3_v1.0_unigene4072 biogeco3 v1.0 551
• AutoFact: pfam12483, GIDE, E3 Ubiquitin ligase 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: mitochondrial ubiquitin ligase activator of nfkb 1-like 0.0
Putative C-terminus
biog3_v1.0_unigene4095 biogeco3 v1.0 1323
• AutoFact: Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana] gb|AEE35529.1| Transmembrane Fragile-X-F-associated protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: transmembrane fragile-x-f-associated protein 0.0
C-terminus
biog3_v1.0_unigene4098 biogeco3 v1.0 550
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ring zinc finger 0.0
C-terminus
biog3_v1.0_unigene4125 biogeco3 v1.0 495
• AutoFact: cellulose synthase 6 [Populus tremuloides] 0.0
• FL-Next: tr=Cellulose synthase catalytic subunit; Pinus taeda (Loblolly pine). 0.0
• Blast2go: cellulose synthase 0.0
Internal
biog3_v1.0_unigene4179 biogeco3 v1.0 337
• AutoFact: Unassigned protein
• FL-Next: sp=NF-X1-type zinc finger protein NFXL1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: nf-x1-type zinc finger protein nfxl1-like 0.0
Internal
biog3_v1.0_unigene4206 biogeco3 v1.0 366
• AutoFact: putative peroxin [Oryza sativa Japonica Group] 0.0
• FL-Next: sp=Peroxisome biogenesis protein 12; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: protein 0.0
N-terminus
biog3_v1.0_unigene4214 biogeco3 v1.0 370
• AutoFact: RING-H2 finger protein ATL51 [Arabidopsis thaliana] sp|Q9SRQ8.2|ATL51_ARATH RecName: Full=RING-H2 finger protein ATL51 gb|AAF03479.1|AC009327_18 unknown protein [Arabidopsis thaliana] gb|AAM62688.1| RING-H2 zinc finger protein-like [Arabidopsis thaliana] 8.0e-05
• Blast2go: e3 ubiquitin-protein ligase os04g0590900-like 2.20657e-38
unknown
biog3_v1.0_unigene4227 biogeco3 v1.0 535
• AutoFact: protein phosphatase 2C (PP2C) [Fagus sylvatica] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein phosphatase 0.0
N-terminus
biog3_v1.0_unigene4240 biogeco3 v1.0 1023
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: ring u-box domain-containing protein 0.0
N-terminus
biog3_v1.0_unigene4267 biogeco3 v1.0 618
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_001078409.1| RING/U-box domain-containing protein [Arabidopsis thaliana] emb|CAA19684.1| putative protein [Arabidopsis thaliana] emb|CAB78969.1| putative protein [Arabidopsis thaliana] gb| 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene4270 biogeco3 v1.0 391
• AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
• FL-Next: sp=E3 ubiquitin-protein ligase BRE1-like 2; Oryza sativa subsp. japonica (Rice). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain