Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: Nucleotide-binding, alpha-beta plait

Term: IPR012677  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene7085 biogeco3 v1.0 875
• AutoFact: pre-mRNA splicing factor domain-containing protein [Arabidopsis thaliana] gb|AAC16071.1| expressed protein [Arabidopsis thaliana] gb|AAK74011.1| At2g44200/F6E13.34 [Arabidopsis thaliana] gb|AAM14905.1| expressed protein [Arabidopsis thaliana] gb|AAM47345. 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: pre-mrna splicing factor domain-containing protein 0.0
C-terminus
biog3_v1.0_unigene7149 biogeco3 v1.0 501
• AutoFact: Nucleotide-sugar transporter family protein [Arabidopsis thaliana] sp|Q9LRP2.1|PT317_ARATH RecName: Full=Probable sugar phosphate/phosphate translocator At3g17430 dbj|BAB02919.1| unnamed protein product [Arabidopsis thaliana] gb|AAL24335.1| Unknown protei 1.0e-26
• Blast2go: probable sugar phosphate phosphate translocator at3g17430-like 2.12575e-30
unknown
biog3_v1.0_unigene7160 biogeco3 v1.0 1369
• AutoFact: RNA recognition motif and CCHC-type zinc finger domain-containing protein [Arabidopsis thaliana] gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana] dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana] gb|AAK96804.1| Unknown prot 7.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna recognition motif family expressed 0.0
Complete
biog3_v1.0_unigene7200 biogeco3 v1.0 526
• AutoFact: putative amino acid or GABA permease [Arabidopsis thaliana] 0.0
• FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
• Blast2go: amino acid transporter 0.0
C-terminus
biog3_v1.0_unigene7266 biogeco3 v1.0 577
• AutoFact: polypyrimidine tract-binding protein 2 [Arabidopsis thaliana] sp|Q9FGL9.1|PTBP2_ARATH RecName: Full=Polypyrimidine tract-binding protein homolog 2 dbj|BAB08421.1| polypyrimidine tract-binding RNA transport protein-like [Arabidopsis thaliana] gb|AAU90050.1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene7366 biogeco3 v1.0 317
• AutoFact: putative RNA binding protein [Arabidopsis thaliana] 1.0e-07
• Blast2go: glycine-rich rna-binding protein 7 6.73043e-14
unknown
biog3_v1.0_unigene7379 biogeco3 v1.0 307
• AutoFact: Rop guanine nucleotide exchange factor 1 [Arabidopsis thaliana] sp|Q93ZY2.2|ROGF1_ARATH RecName: Full=Rop guanine nucleotide exchange factor 1; Short=RopGEF1; AltName: Full=Kinase partner protein-like; Short=KPP-like emb|CAB37499.1| putative protein [Arab 0.0
• FL-Next: tr=Rop guanine nucleotide exchange factor, putative; Ricinus communis (Castor bean). 0.0
• Blast2go: protein 0.0
Internal
biog3_v1.0_unigene7441 biogeco3 v1.0 349
• AutoFact: RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SEZ1_RICCO 2.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: flowering time control protein fpa 0.0
Internal
biog3_v1.0_unigene7615 biogeco3 v1.0 399
• AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Blast2go: rna recognition motif -containing protein 0.0
Internal
biog3_v1.0_unigene7665 biogeco3 v1.0 1367
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
Putative Complete
biog3_v1.0_unigene7668 biogeco3 v1.0 601
• AutoFact: Cell division protein ftsH, putative n=1 Tax=Ricinus communis RepID=B9SHY4_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic-like 0.0
Internal
biog3_v1.0_unigene7732 biogeco3 v1.0 345
• AutoFact: putative RNA-binding protein RBP37 [Oryza sativa Japonica Group] dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group] dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza s 0.0
• Blast2go: rna-binding protein 0.0
Coding
biog3_v1.0_unigene7769 biogeco3 v1.0 2266
• AutoFact: pfam05691, Raffinose_syn, Raffinose synthase or seed inhibition protein Sip1 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: alkaline alpha galactosidase 0.0
Complete
biog3_v1.0_unigene7819 biogeco3 v1.0 784
• AutoFact: Gly_rich multi-domain protein 5.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Internal
biog3_v1.0_unigene7820 biogeco3 v1.0 647
• AutoFact: Drf_FH1 multi-domain protein 2.0e-11
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
• Blast2go: tbp-associated factor 15b 0.0
C-terminus
biog3_v1.0_unigene7853 biogeco3 v1.0 1111
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 4.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
C-terminus
biog3_v1.0_unigene7886 biogeco3 v1.0 2460
• AutoFact: tobacco nucleolin [Nicotiana tabacum] 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna-binding protein 1.68156e-44
Complete
biog3_v1.0_unigene7916 biogeco3 v1.0 316
• AutoFact: putative beta-1,3-galactosyltransferase 6 [Arabidopsis thaliana] sp|Q9MAP8.1|B3GT6_ARATH RecName: Full=Probable beta-1,3-galactosyltransferase 6 gb|AAF31275.1|AC006424_4 Highly similar to avr9 [Arabidopsis thaliana] gb|AAP21243.1| At1g32930 [Arabidopsis t 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: glycosyltransferase-like protein 0.0
Putative N-terminus
biog3_v1.0_unigene7943 biogeco3 v1.0 371
• AutoFact: putative beta-1,3-galactosyltransferase 2 [Arabidopsis thaliana] gb|AAK63859.1|AF389287_1 At1g05170/YUP8H12_22 [Arabidopsis thaliana] gb|AAB71461.1| Similar to Sequence 10 from patent 5477002 (gb|1253956) [Arabidopsis thaliana] gb|AAM47315.1| At1g05170/YU 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: galactosyltransferase family protein 0.0
Internal
biog3_v1.0_unigene7962 biogeco3 v1.0 275
• AutoFact: RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] dbj|BAB09686.1| unnamed protein product [Arabidopsis thaliana] gb|AAL32792.1| Unknown protein [Arabidopsis thaliana] gb|AAM13348.1| unknown protein [Arabidopsis thaliana] gb|AAM65119.1| 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: glycine-rich rna-binding protein 2 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain