Sustainpine_db
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Assembly Name: biogeco3 v1.0

Name: Nucleotide-binding, alpha-beta plait

Term: IPR012677  Help

Source: InterPro from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
biog3_v1.0_unigene25683 biogeco3 v1.0 661
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] dbj|BAB03120.1| unnamed protein product [Arabidopsis thaliana] gb|AAL85976.1| unknown protein [Arabidopsis thaliana] gb|AAM67536.1| unknown protein [Arabidopsis thaliana] dbj|BAD94504.1| hypo 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: heterogeneous nuclear ribonucleoprotein 0.0
Internal
biog3_v1.0_unigene25721 biogeco3 v1.0 295
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp41 0.0
Putative C-terminus
biog3_v1.0_unigene25774 biogeco3 v1.0 623
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp40-like 0.0
Putative N-terminus
biog3_v1.0_unigene25829 biogeco3 v1.0 489
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u2 snrnp auxiliary small 0.0
Internal
biog3_v1.0_unigene25871 biogeco3 v1.0 332
• AutoFact: Phytochrome A-associated F-box protein, putative n=1 Tax=Ricinus communis RepID=B9SAQ8_RICCO 0.0
• Blast2go: phytochrome a-associated f-box protein 0.0
Putative coding
biog3_v1.0_unigene25896 biogeco3 v1.0 299
• AutoFact: 40S ribosomal protein S24 n=2 Tax=Picea sitchensis RepID=A9NKN3_PICSI 0.0
• FL-Next: sp=40S ribosomal protein S24; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: protein 0.0
N-terminus
biog3_v1.0_unigene25954 biogeco3 v1.0 321
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 5.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: ctc-interacting domain 11 protein 0.0
Internal
biog3_v1.0_unigene25971 biogeco3 v1.0 396
• AutoFact: tobacco nucleolin [Nicotiana tabacum] 5.60519e-45
• Blast2go: rna-binding protein 0.0
Coding
biog3_v1.0_unigene26050 biogeco3 v1.0 164
• AutoFact: cell division protease ftsH-11 [Arabidopsis thaliana] sp|Q9FGM0.1|FTSHB_ARATH RecName: Full=ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial; Short=AtFTSH11; Flags: Precursor dbj|BAB08420.1| cell division protein FtsH protease-like 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial-like 0.0
Internal
biog3_v1.0_unigene26058 biogeco3 v1.0 402
• AutoFact: aminopeptidase M1 [Arabidopsis thaliana] gb|AAL38379.1| AT4g33090/F4I10_20 [Arabidopsis thaliana] gb|AAN41401.1| aminopeptidase M [Arabidopsis thaliana] gb|AAO64746.1| At4g33090/F4I10_20 [Arabidopsis thaliana] dbj|BAE99157.1| aminopeptidase like protein [ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: puromycin-sensitive aminopeptidase 0.0
Internal
biog3_v1.0_unigene26075 biogeco3 v1.0 257
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: u2 snrnp auxiliary small 0.0
C-terminus
biog3_v1.0_unigene26132 biogeco3 v1.0 223
• AutoFact: splicing factor-like protein [Vitis riparia] 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp41 0.0
Putative N-terminus
biog3_v1.0_unigene26135 biogeco3 v1.0 197
• AutoFact: SET domain-containing protein (ISS) [Ostreococcus tauri] emb|CAL55747.1| SET domain-containing protein (ISS) [Ostreococcus tauri] 0.0
• FL-Next: sp=Probable histone-lysine N-methyltransferase ATXR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Blast2go: probable histone-lysine n-methyltransferase atxr3-like 0.0
Internal
biog3_v1.0_unigene26155 biogeco3 v1.0 154
• AutoFact: tobacco nucleolin [Nicotiana tabacum] 5.60519e-45
• Blast2go: rna-binding protein 0.0
unknown
biog3_v1.0_unigene26205 biogeco3 v1.0 295
• AutoFact: [R] COG0724 RNA-binding proteins (RRM domain) 7.0e-36
• Blast2go: spliceosomal protein 0.0
unknown
biog3_v1.0_unigene26403 biogeco3 v1.0 241
• AutoFact: polypyrimidine tract-binding-like [Solanum tuberosum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: polypyrimidine tract-binding protein homolog 2-like 0.0
Internal
biog3_v1.0_unigene26419 biogeco3 v1.0 338
• AutoFact: Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: arginine serine-rich-splicing factor rsp40-like 0.0
Internal
biog3_v1.0_unigene26450 biogeco3 v1.0 78
• AutoFact: heterogeneous nuclear ribonucleoprotein A1/A3 [Arabidopsis thaliana] dbj|BAB08520.1| unnamed protein product [Arabidopsis thaliana] gb|AAM97131.1| ribonucleoprotein-like [Arabidopsis thaliana] gb|AED94553.1| heterogeneous nuclear ribonucleoprotein A1/A3 [ 0.0
• Blast2go: rna recognition motif-containing protein 0.0
unknown
biog3_v1.0_unigene26458 biogeco3 v1.0 781
• AutoFact: poly(A)-binding protein [Cucumis sativus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: poly -binding protein 0.0
C-terminus
biog3_v1.0_unigene26532 biogeco3 v1.0 369
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Blast2go: rna binding 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain